Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 298160 reads mapping to 120156 Unique genomic coordinates Making up 2644 groups Consisting of 676 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 217862 reads mapping to 120719 Unique genomic coordinates Making up 2616 groups Consisting of 664 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 295794 reads mapping to 135119 Unique genomic coordinates Making up 3004 groups Consisting of 856 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 320378 reads mapping to 128053 Unique genomic coordinates Making up 2793 groups Consisting of 760 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 260383 reads mapping to 132720 Unique genomic coordinates Making up 2902 groups Consisting of 743 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 423688 reads mapping to 133491 Unique genomic coordinates Making up 2963 groups Consisting of 762 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 461353 reads mapping to 125207 Unique genomic coordinates Making up 2666 groups Consisting of 712 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 401247 reads mapping to 131564 Unique genomic coordinates Making up 2857 groups Consisting of 734 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 344698 reads mapping to 125554 Unique genomic coordinates Making up 2743 groups Consisting of 712 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 352207 reads mapping to 128358 Unique genomic coordinates Making up 2815 groups Consisting of 752 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 382460 reads mapping to 123066 Unique genomic coordinates Making up 2668 groups Consisting of 696 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 266114 reads mapping to 128859 Unique genomic coordinates Making up 2838 groups Consisting of 800 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 388714 reads mapping to 133070 Unique genomic coordinates Making up 2891 groups Consisting of 736 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 256495 reads mapping to 130826 Unique genomic coordinates Making up 2835 groups Consisting of 723 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 283681 reads mapping to 132142 Unique genomic coordinates Making up 2887 groups Consisting of 773 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 314053 reads mapping to 135374 Unique genomic coordinates Making up 2986 groups Consisting of 807 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 292154 reads mapping to 130625 Unique genomic coordinates Making up 2852 groups Consisting of 779 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 393386 reads mapping to 134773 Unique genomic coordinates Making up 2936 groups Consisting of 820 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 418631 reads mapping to 131721 Unique genomic coordinates Making up 2917 groups Consisting of 777 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 288742 reads mapping to 133770 Unique genomic coordinates Making up 2927 groups Consisting of 757 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 251065 reads mapping to 124378 Unique genomic coordinates Making up 2775 groups Consisting of 733 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 263976 reads mapping to 119989 Unique genomic coordinates Making up 2599 groups Consisting of 705 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 493995 reads mapping to 132386 Unique genomic coordinates Making up 2910 groups Consisting of 777 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 233087 reads mapping to 130537 Unique genomic coordinates Making up 2870 groups Consisting of 733 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 280391 reads mapping to 132334 Unique genomic coordinates Making up 2826 groups Consisting of 759 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 280578 reads mapping to 126295 Unique genomic coordinates Making up 2716 groups Consisting of 715 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 303479 reads mapping to 135790 Unique genomic coordinates Making up 2913 groups Consisting of 787 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 233775 reads mapping to 124427 Unique genomic coordinates Making up 2800 groups Consisting of 722 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 404166 reads mapping to 127630 Unique genomic coordinates Making up 2721 groups Consisting of 688 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 438326 reads mapping to 127898 Unique genomic coordinates Making up 2731 groups Consisting of 733 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 290204 reads mapping to 133926 Unique genomic coordinates Making up 2904 groups Consisting of 790 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 272141 reads mapping to 136994 Unique genomic coordinates Making up 2888 groups Consisting of 758 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 246161 reads mapping to 126455 Unique genomic coordinates Making up 2688 groups Consisting of 704 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 352629 reads mapping to 130690 Unique genomic coordinates Making up 2824 groups Consisting of 724 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 268642 reads mapping to 128741 Unique genomic coordinates Making up 2804 groups Consisting of 723 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 283861 reads mapping to 129202 Unique genomic coordinates Making up 2836 groups Consisting of 739 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 269307 reads mapping to 130311 Unique genomic coordinates Making up 2865 groups Consisting of 788 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 227387 reads mapping to 124905 Unique genomic coordinates Making up 2821 groups Consisting of 743 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 347898 reads mapping to 127170 Unique genomic coordinates Making up 2753 groups Consisting of 718 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 270653 reads mapping to 130368 Unique genomic coordinates Making up 2799 groups Consisting of 771 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 264559 reads mapping to 127201 Unique genomic coordinates Making up 2746 groups Consisting of 745 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 296850 reads mapping to 135340 Unique genomic coordinates Making up 2924 groups Consisting of 764 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 239198 reads mapping to 121763 Unique genomic coordinates Making up 2702 groups Consisting of 688 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 225375 reads mapping to 130179 Unique genomic coordinates Making up 2869 groups Consisting of 777 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 251904 reads mapping to 127846 Unique genomic coordinates Making up 2846 groups Consisting of 733 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 254683 reads mapping to 132778 Unique genomic coordinates Making up 2926 groups Consisting of 812 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 298732 reads mapping to 133124 Unique genomic coordinates Making up 2863 groups Consisting of 785 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 255142 reads mapping to 126286 Unique genomic coordinates Making up 2845 groups Consisting of 744 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 228842 reads mapping to 126977 Unique genomic coordinates Making up 2855 groups Consisting of 770 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 468100 reads mapping to 130113 Unique genomic coordinates Making up 2858 groups Consisting of 757 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 338646 reads mapping to 132751 Unique genomic coordinates Making up 2947 groups Consisting of 765 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 430076 reads mapping to 122531 Unique genomic coordinates Making up 2692 groups Consisting of 711 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 435594 reads mapping to 135769 Unique genomic coordinates Making up 2979 groups Consisting of 868 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 252569 reads mapping to 131837 Unique genomic coordinates Making up 2942 groups Consisting of 779 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 239005 reads mapping to 133356 Unique genomic coordinates Making up 2897 groups Consisting of 732 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000031349-chr5-+-124933143-124933755 l45 e 55 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 541976 reads mapping to 125291 Unique genomic coordinates Making up 2710 groups Consisting of 723 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 398875 reads mapping to 133501 Unique genomic coordinates Making up 2836 groups Consisting of 831 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 246284 reads mapping to 134170 Unique genomic coordinates Making up 2977 groups Consisting of 808 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 279433 reads mapping to 125073 Unique genomic coordinates Making up 2676 groups Consisting of 755 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 319480 reads mapping to 126474 Unique genomic coordinates Making up 2846 groups Consisting of 738 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 279178 reads mapping to 126864 Unique genomic coordinates Making up 2817 groups Consisting of 741 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 245808 reads mapping to 126686 Unique genomic coordinates Making up 2752 groups Consisting of 738 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 372255 reads mapping to 130879 Unique genomic coordinates Making up 2887 groups Consisting of 785 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 291168 reads mapping to 125947 Unique genomic coordinates Making up 2712 groups Consisting of 723 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 316106 reads mapping to 131868 Unique genomic coordinates Making up 2805 groups Consisting of 747 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 304128 reads mapping to 125799 Unique genomic coordinates Making up 2679 groups Consisting of 695 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 184826 reads mapping to 113503 Unique genomic coordinates Making up 2511 groups Consisting of 605 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 236553 reads mapping to 129582 Unique genomic coordinates Making up 2905 groups Consisting of 798 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 282587 reads mapping to 132509 Unique genomic coordinates Making up 2912 groups Consisting of 731 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 303860 reads mapping to 122721 Unique genomic coordinates Making up 2629 groups Consisting of 663 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 242588 reads mapping to 119258 Unique genomic coordinates Making up 2557 groups Consisting of 683 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 275280 reads mapping to 126844 Unique genomic coordinates Making up 2817 groups Consisting of 729 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 341519 reads mapping to 133208 Unique genomic coordinates Making up 2866 groups Consisting of 837 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 252575 reads mapping to 128263 Unique genomic coordinates Making up 2833 groups Consisting of 736 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 371836 reads mapping to 130641 Unique genomic coordinates Making up 2865 groups Consisting of 756 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000075806-chr16---29260503-29261575 l44 e 75 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 650501 reads mapping to 129092 Unique genomic coordinates Making up 2761 groups Consisting of 724 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000174078-chr4-+-139169209-139171476 l45 e 76 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 590510 reads mapping to 125463 Unique genomic coordinates Making up 2726 groups Consisting of 752 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 250804 reads mapping to 125321 Unique genomic coordinates Making up 2821 groups Consisting of 733 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000112294-chrX-+-160364335-160367478 l45 e 78 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 500543 reads mapping to 140424 Unique genomic coordinates Making up 3064 groups Consisting of 835 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 243790 reads mapping to 126381 Unique genomic coordinates Making up 2804 groups Consisting of 746 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 399677 reads mapping to 133983 Unique genomic coordinates Making up 2918 groups Consisting of 795 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 376276 reads mapping to 124406 Unique genomic coordinates Making up 2693 groups Consisting of 704 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 298254 reads mapping to 134074 Unique genomic coordinates Making up 2924 groups Consisting of 780 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 266058 reads mapping to 133070 Unique genomic coordinates Making up 2917 groups Consisting of 751 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 237588 reads mapping to 121310 Unique genomic coordinates Making up 2665 groups Consisting of 665 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000122426-chr5---122277911-122279585 l45 e 85 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 593806 reads mapping to 134137 Unique genomic coordinates Making up 2907 groups Consisting of 786 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 446031 reads mapping to 132800 Unique genomic coordinates Making up 2906 groups Consisting of 797 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 315252 reads mapping to 136288 Unique genomic coordinates Making up 2963 groups Consisting of 783 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 271124 reads mapping to 130237 Unique genomic coordinates Making up 2790 groups Consisting of 735 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 233746 reads mapping to 122298 Unique genomic coordinates Making up 2668 groups Consisting of 751 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 336103 reads mapping to 126096 Unique genomic coordinates Making up 2640 groups Consisting of 717 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 451657 reads mapping to 129995 Unique genomic coordinates Making up 2827 groups Consisting of 750 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 1000000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1242758 reads mapping to 125992 Unique genomic coordinates Making up 2740 groups Consisting of 705 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 297176 reads mapping to 133926 Unique genomic coordinates Making up 2957 groups Consisting of 789 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 250134 reads mapping to 135424 Unique genomic coordinates Making up 2939 groups Consisting of 769 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 240991 reads mapping to 125238 Unique genomic coordinates Making up 2818 groups Consisting of 755 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 311915 reads mapping to 132755 Unique genomic coordinates Making up 2940 groups Consisting of 838 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 312213 reads mapping to 126561 Unique genomic coordinates Making up 2747 groups Consisting of 782 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000131662-chr6---146522724-146523798 l45 e 98 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 562956 reads mapping to 132755 Unique genomic coordinates Making up 2826 groups Consisting of 819 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 276978 reads mapping to 126629 Unique genomic coordinates Making up 2751 groups Consisting of 722 clusters