Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 149489 reads mapping to 56384 Unique genomic coordinates Making up 1131 groups Consisting of 258 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 101378 reads mapping to 56356 Unique genomic coordinates Making up 1129 groups Consisting of 255 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 141492 reads mapping to 63473 Unique genomic coordinates Making up 1326 groups Consisting of 318 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 158127 reads mapping to 60791 Unique genomic coordinates Making up 1197 groups Consisting of 326 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 126963 reads mapping to 62593 Unique genomic coordinates Making up 1255 groups Consisting of 277 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 219801 reads mapping to 62537 Unique genomic coordinates Making up 1289 groups Consisting of 294 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 243481 reads mapping to 59357 Unique genomic coordinates Making up 1243 groups Consisting of 274 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 213167 reads mapping to 62213 Unique genomic coordinates Making up 1284 groups Consisting of 296 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 175718 reads mapping to 59110 Unique genomic coordinates Making up 1230 groups Consisting of 263 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 183364 reads mapping to 61069 Unique genomic coordinates Making up 1207 groups Consisting of 307 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 200972 reads mapping to 58176 Unique genomic coordinates Making up 1182 groups Consisting of 275 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 132127 reads mapping to 61051 Unique genomic coordinates Making up 1270 groups Consisting of 300 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 201628 reads mapping to 63294 Unique genomic coordinates Making up 1268 groups Consisting of 295 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 125719 reads mapping to 60723 Unique genomic coordinates Making up 1210 groups Consisting of 290 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 134684 reads mapping to 61773 Unique genomic coordinates Making up 1227 groups Consisting of 290 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 158690 reads mapping to 64226 Unique genomic coordinates Making up 1310 groups Consisting of 322 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 140973 reads mapping to 61945 Unique genomic coordinates Making up 1292 groups Consisting of 310 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 200891 reads mapping to 64249 Unique genomic coordinates Making up 1291 groups Consisting of 334 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 213682 reads mapping to 62256 Unique genomic coordinates Making up 1306 groups Consisting of 300 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 144947 reads mapping to 62890 Unique genomic coordinates Making up 1290 groups Consisting of 304 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 124188 reads mapping to 58845 Unique genomic coordinates Making up 1241 groups Consisting of 302 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 126501 reads mapping to 57055 Unique genomic coordinates Making up 1148 groups Consisting of 271 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 251060 reads mapping to 63019 Unique genomic coordinates Making up 1259 groups Consisting of 304 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 109532 reads mapping to 60979 Unique genomic coordinates Making up 1240 groups Consisting of 299 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 141886 reads mapping to 62159 Unique genomic coordinates Making up 1273 groups Consisting of 289 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 138453 reads mapping to 59294 Unique genomic coordinates Making up 1148 groups Consisting of 286 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 150813 reads mapping to 64341 Unique genomic coordinates Making up 1275 groups Consisting of 318 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 113327 reads mapping to 58672 Unique genomic coordinates Making up 1249 groups Consisting of 295 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 197492 reads mapping to 60427 Unique genomic coordinates Making up 1188 groups Consisting of 263 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 234723 reads mapping to 60467 Unique genomic coordinates Making up 1211 groups Consisting of 265 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 144175 reads mapping to 63552 Unique genomic coordinates Making up 1285 groups Consisting of 297 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 129107 reads mapping to 65243 Unique genomic coordinates Making up 1307 groups Consisting of 327 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 116678 reads mapping to 59313 Unique genomic coordinates Making up 1181 groups Consisting of 298 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 178670 reads mapping to 61988 Unique genomic coordinates Making up 1208 groups Consisting of 293 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 131437 reads mapping to 61647 Unique genomic coordinates Making up 1256 groups Consisting of 321 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 139712 reads mapping to 60706 Unique genomic coordinates Making up 1184 groups Consisting of 272 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 129338 reads mapping to 61536 Unique genomic coordinates Making up 1301 groups Consisting of 311 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 107378 reads mapping to 58515 Unique genomic coordinates Making up 1257 groups Consisting of 300 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 170997 reads mapping to 60362 Unique genomic coordinates Making up 1196 groups Consisting of 271 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 131134 reads mapping to 61823 Unique genomic coordinates Making up 1247 groups Consisting of 302 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 130978 reads mapping to 60046 Unique genomic coordinates Making up 1170 groups Consisting of 301 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 143134 reads mapping to 63632 Unique genomic coordinates Making up 1328 groups Consisting of 307 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 116428 reads mapping to 57071 Unique genomic coordinates Making up 1122 groups Consisting of 253 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 106384 reads mapping to 60777 Unique genomic coordinates Making up 1254 groups Consisting of 313 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 124955 reads mapping to 60249 Unique genomic coordinates Making up 1262 groups Consisting of 284 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 122913 reads mapping to 63258 Unique genomic coordinates Making up 1312 groups Consisting of 344 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 140833 reads mapping to 62799 Unique genomic coordinates Making up 1299 groups Consisting of 328 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 118808 reads mapping to 59763 Unique genomic coordinates Making up 1248 groups Consisting of 300 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 108437 reads mapping to 59843 Unique genomic coordinates Making up 1247 groups Consisting of 308 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 231770 reads mapping to 61504 Unique genomic coordinates Making up 1260 groups Consisting of 294 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 163386 reads mapping to 62893 Unique genomic coordinates Making up 1278 groups Consisting of 313 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 234238 reads mapping to 58292 Unique genomic coordinates Making up 1199 groups Consisting of 299 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 223641 reads mapping to 64984 Unique genomic coordinates Making up 1324 groups Consisting of 356 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 122275 reads mapping to 62041 Unique genomic coordinates Making up 1283 groups Consisting of 328 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 111432 reads mapping to 62514 Unique genomic coordinates Making up 1256 groups Consisting of 320 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 247777 reads mapping to 58778 Unique genomic coordinates Making up 1150 groups Consisting of 292 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 198156 reads mapping to 63432 Unique genomic coordinates Making up 1303 groups Consisting of 317 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 117335 reads mapping to 63723 Unique genomic coordinates Making up 1330 groups Consisting of 325 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 141947 reads mapping to 59607 Unique genomic coordinates Making up 1256 groups Consisting of 308 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 154481 reads mapping to 59399 Unique genomic coordinates Making up 1242 groups Consisting of 280 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 141312 reads mapping to 60394 Unique genomic coordinates Making up 1266 groups Consisting of 295 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 118943 reads mapping to 59812 Unique genomic coordinates Making up 1186 groups Consisting of 274 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 193168 reads mapping to 61863 Unique genomic coordinates Making up 1298 groups Consisting of 321 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 147390 reads mapping to 59642 Unique genomic coordinates Making up 1217 groups Consisting of 299 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 160961 reads mapping to 62546 Unique genomic coordinates Making up 1259 groups Consisting of 327 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 148729 reads mapping to 59869 Unique genomic coordinates Making up 1177 groups Consisting of 298 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 85229 reads mapping to 52396 Unique genomic coordinates Making up 1042 groups Consisting of 234 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 112839 reads mapping to 61134 Unique genomic coordinates Making up 1291 groups Consisting of 307 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 135133 reads mapping to 61966 Unique genomic coordinates Making up 1279 groups Consisting of 305 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 149811 reads mapping to 57744 Unique genomic coordinates Making up 1115 groups Consisting of 246 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 115737 reads mapping to 55713 Unique genomic coordinates Making up 1104 groups Consisting of 272 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 132985 reads mapping to 59542 Unique genomic coordinates Making up 1206 groups Consisting of 285 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 165002 reads mapping to 63464 Unique genomic coordinates Making up 1325 groups Consisting of 354 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 123527 reads mapping to 60389 Unique genomic coordinates Making up 1220 groups Consisting of 293 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 183485 reads mapping to 61320 Unique genomic coordinates Making up 1258 groups Consisting of 290 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 342297 reads mapping to 61119 Unique genomic coordinates Making up 1211 groups Consisting of 288 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 307652 reads mapping to 59840 Unique genomic coordinates Making up 1229 groups Consisting of 302 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 121627 reads mapping to 58892 Unique genomic coordinates Making up 1213 groups Consisting of 288 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 251725 reads mapping to 66528 Unique genomic coordinates Making up 1381 groups Consisting of 353 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 121550 reads mapping to 59395 Unique genomic coordinates Making up 1202 groups Consisting of 282 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 196431 reads mapping to 63596 Unique genomic coordinates Making up 1325 groups Consisting of 299 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 203485 reads mapping to 58661 Unique genomic coordinates Making up 1210 groups Consisting of 289 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 145026 reads mapping to 64041 Unique genomic coordinates Making up 1289 groups Consisting of 324 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 131497 reads mapping to 62490 Unique genomic coordinates Making up 1249 groups Consisting of 311 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 114886 reads mapping to 56335 Unique genomic coordinates Making up 1128 groups Consisting of 243 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 350904 reads mapping to 64325 Unique genomic coordinates Making up 1297 groups Consisting of 325 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 236205 reads mapping to 62946 Unique genomic coordinates Making up 1263 groups Consisting of 324 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 158844 reads mapping to 65189 Unique genomic coordinates Making up 1304 groups Consisting of 334 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 132464 reads mapping to 61909 Unique genomic coordinates Making up 1262 groups Consisting of 291 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 112449 reads mapping to 57756 Unique genomic coordinates Making up 1198 groups Consisting of 317 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 163766 reads mapping to 59603 Unique genomic coordinates Making up 1180 groups Consisting of 292 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 242419 reads mapping to 61058 Unique genomic coordinates Making up 1193 groups Consisting of 283 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 635916 reads mapping to 59711 Unique genomic coordinates Making up 1230 groups Consisting of 278 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 145624 reads mapping to 63382 Unique genomic coordinates Making up 1306 groups Consisting of 296 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 118467 reads mapping to 63888 Unique genomic coordinates Making up 1318 groups Consisting of 322 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 116494 reads mapping to 59193 Unique genomic coordinates Making up 1235 groups Consisting of 290 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 153614 reads mapping to 61964 Unique genomic coordinates Making up 1299 groups Consisting of 315 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 149247 reads mapping to 60063 Unique genomic coordinates Making up 1243 groups Consisting of 316 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 304235 reads mapping to 63397 Unique genomic coordinates Making up 1236 groups Consisting of 329 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 132094 reads mapping to 59646 Unique genomic coordinates Making up 1213 groups Consisting of 277 clusters