Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000020886-chr12-+-33517397-33518500 l44 e 0 nr 1000000 chr ENSMUST00000149511-chr3---79423489-79428100 l43 e 0 nr 1500000 chr ENSMUST00000135949-chrX-+-103391682-103393800 l45 e 0 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1523582 reads mapping to 502221 Unique genomic coordinates Making up 13974 groups Consisting of 4635 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000097423-chr17-+-8144914-8146001 l42 e 1 nr 1000000 chr ENSMUST00000084027-chr8-+-26629264-26630401 l43 e 1 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1104374 reads mapping to 508043 Unique genomic coordinates Making up 14109 groups Consisting of 4527 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000109379-chr13---100858808-100859902 l46 e 2 nr 1000000 chr ENSMUST00000168570-chr3-+-51363679-51364202 l43 e 2 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1468173 reads mapping to 560893 Unique genomic coordinates Making up 15316 groups Consisting of 5154 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000032331-chr16---9669298-9670503 l42 e 3 nr 1000000 chr ENSMUST00000154515-chr4-+-128613249-128614403 l45 e 3 nr 1500000 chr ENSMUST00000052368-chrX-+-17799383-17800503 l43 e 3 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1617069 reads mapping to 529956 Unique genomic coordinates Making up 14410 groups Consisting of 4777 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022915-chr15---39600031-39601304 l44 e 4 nr 1000000 chr ENSMUST00000031198-chr5---108415468-108416104 l45 e 4 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1345134 reads mapping to 554295 Unique genomic coordinates Making up 15195 groups Consisting of 5085 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000039894-chr13---14131305-14131905 l44 e 5 nr 1000000 chr ENSMUST00000039894-chr13---14131305-14131905 l44 e 5 nr 1500000 chr ENSMUST00000025778-chr19---30172939-30175905 l44 e 5 nr 2000000 chr ENSMUST00000135107-chrX---58144545-58146605 l43 e 5 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2025052 reads mapping to 553333 Unique genomic coordinates Making up 15302 groups Consisting of 4993 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000045108-chr1-+-188791295-188794506 l45 e 6 nr 1000000 chr ENSMUST00000150459-chr10-+-83224163-83225506 l44 e 6 nr 1500000 chr ENSMUST00000042852-chr18---68419841-68429106 l44 e 6 nr 2000000 chr ENSMUST00000047629-chr8-+-109434342-109435406 l45 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2116522 reads mapping to 518384 Unique genomic coordinates Making up 14380 groups Consisting of 4656 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000131246-chr11-+-86298232-86299607 l44 e 7 nr 1000000 chr ENSMUST00000128873-chr13-+-45637348-45638507 l44 e 7 nr 1500000 chr ENSMUST00000172221-chr4-+-58218207-58219507 l43 e 7 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1915726 reads mapping to 544599 Unique genomic coordinates Making up 14807 groups Consisting of 4840 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161372-chr15-+-88897464-88900308 l44 e 8 nr 1000000 chr ENSMUST00000112817-chr5---104304260-104305808 l45 e 8 nr 1500000 chr ENSMUST00000046993-chr7---127197617-127198708 l45 e 8 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1656239 reads mapping to 523057 Unique genomic coordinates Making up 14380 groups Consisting of 4671 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000170790-chr14-+-3139968-3141609 l42 e 9 nr 1000000 chr ENSMUST00000114269-chr2-+-25287016-25288109 l43 e 9 nr 1500000 chr ENSMUST00000153922-chr6-+-22073052-22075009 l43 e 9 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1745627 reads mapping to 531895 Unique genomic coordinates Making up 14389 groups Consisting of 4863 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000160172-chr15-+-76181757-76184810 l44 e 10 nr 1000000 chr ENSMUST00000106210-chr3---144364272-144365310 l45 e 10 nr 1500000 chr ENSMUST00000049545-chr5-+-35621215-35624410 l43 e 10 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1891748 reads mapping to 513735 Unique genomic coordinates Making up 14154 groups Consisting of 4614 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000062827-chr17---23843880-23852211 l44 e 11 nr 1000000 chr ENSMUST00000069967-chr7-+-28602374-28603811 l43 e 11 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1397264 reads mapping to 533131 Unique genomic coordinates Making up 14426 groups Consisting of 4853 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000151691-chr11-+-115843515-115846912 l46 e 12 nr 1000000 chr ENSMUST00000110538-chr2---122127927-122131512 l45 e 12 nr 1500000 chr ENSMUST00000165770-chr8---90303598-90307812 l43 e 12 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1895826 reads mapping to 549812 Unique genomic coordinates Making up 14752 groups Consisting of 4834 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000140625-chr13-+-89233656-89236113 l44 e 13 nr 1000000 chr ENSMUST00000045154-chr4---132337758-132339913 l45 e 13 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1322844 reads mapping to 548154 Unique genomic coordinates Making up 14967 groups Consisting of 4962 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000067215-chr15---83140180-83141314 l44 e 14 nr 1000000 chr ENSMUST00000111171-chr5---135856290-135861314 l45 e 14 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1408650 reads mapping to 548978 Unique genomic coordinates Making up 15071 groups Consisting of 5038 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000160149-chr14-+-11609003-11611515 l44 e 15 nr 1000000 chr ENSMUST00000030638-chr4-+-133875047-133876215 l45 e 15 nr 1500000 chr ENSMUST00000034984-chr9---96506012-96507115 l43 e 15 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1559188 reads mapping to 558497 Unique genomic coordinates Making up 15168 groups Consisting of 5088 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000141358-chr14-+-46999089-46999816 l44 e 16 nr 1000000 chr ENSMUST00000053733-chr5---84759753-84761416 l43 e 16 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1439279 reads mapping to 538906 Unique genomic coordinates Making up 14566 groups Consisting of 4886 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000164405-chr13-+-76276436-76278617 l44 e 17 nr 1000000 chr ENSMUST00000093591-chr2-+-10429545-10429617 l43 e 17 nr 1500000 chr ENSMUST00000043815-chr6-+-35160328-35161517 l43 e 17 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1924564 reads mapping to 551417 Unique genomic coordinates Making up 15018 groups Consisting of 4982 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000111955-chr14-+-34132889-34133618 l44 e 18 nr 1000000 chr ENSMUST00000163396-chr14-+-118652901-118654018 l46 e 18 nr 1500000 chr ENSMUST00000042148-chr3---8923087-8923918 l41 e 18 nr 2000000 chr ENSMUST00000149811-chrX-+-140797908-140800018 l45 e 18 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2018776 reads mapping to 544235 Unique genomic coordinates Making up 14781 groups Consisting of 4966 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000166310-chr14-+-57100304-57102819 l44 e 19 nr 1000000 chr ENSMUST00000114300-chr5-+-35236494-35240119 l43 e 19 nr 1500000 chr ENSMUST00000112129-chrX-+-165695084-165696919 l45 e 19 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1500983 reads mapping to 558295 Unique genomic coordinates Making up 15442 groups Consisting of 5094 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000112330-chr14---27261561-27262620 l44 e 20 nr 1000000 chr ENSMUST00000056548-chr4-+-73659338-73660320 l43 e 20 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1312985 reads mapping to 512114 Unique genomic coordinates Making up 14077 groups Consisting of 4678 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022136-chr13---101393875-101395021 l46 e 21 nr 1000000 chr ENSMUST00000071812-chr3-+-87892316-87896921 l43 e 21 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1350891 reads mapping to 502314 Unique genomic coordinates Making up 13701 groups Consisting of 4504 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000133218-chr1---177533569-177534722 l45 e 22 nr 1000000 chr ENSMUST00000022641-chr14---69190383-69191822 l44 e 22 nr 1500000 chr ENSMUST00000102729-chr4-+-109057424-109060422 l45 e 22 nr 2000000 chr ENSMUST00000125981-chr4---125913377-125915022 l45 e 22 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2365308 reads mapping to 546715 Unique genomic coordinates Making up 14953 groups Consisting of 5128 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022861-chr15-+-9241004-9242223 l42 e 23 nr 1000000 chr ENSMUST00000126402-chr6---52181198-52183323 l43 e 23 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1199029 reads mapping to 548000 Unique genomic coordinates Making up 14832 groups Consisting of 4951 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000076698-chr12-+-33638756-33639724 l44 e 24 nr 1000000 chr ENSMUST00000038824-chr2---170316588-170318724 l45 e 24 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1426280 reads mapping to 554192 Unique genomic coordinates Making up 15198 groups Consisting of 4991 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000130036-chr16---44110708-44112325 l44 e 25 nr 1000000 chr ENSMUST00000098006-chr4-+-73790438-73791525 l43 e 25 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1400008 reads mapping to 525976 Unique genomic coordinates Making up 14419 groups Consisting of 4775 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165466-chr14-+-4455992-4457726 l42 e 26 nr 1000000 chr ENSMUST00000121319-chr2---159684161-159685026 l45 e 26 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1495623 reads mapping to 563890 Unique genomic coordinates Making up 15571 groups Consisting of 5069 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000168906-chr14-+-44701516-44703127 l44 e 27 nr 1000000 chr ENSMUST00000089334-chr6-+-91973998-91975127 l43 e 27 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1181614 reads mapping to 517178 Unique genomic coordinates Making up 13961 groups Consisting of 4626 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000128069-chr14---69125411-69128028 l44 e 28 nr 1000000 chr ENSMUST00000134661-chr2-+-118639739-118640728 l45 e 28 nr 1500000 chr ENSMUST00000085774-chr5-+-142603225-142604328 l45 e 28 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1915231 reads mapping to 531744 Unique genomic coordinates Making up 14630 groups Consisting of 4780 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000142242-chr11---121768764-121770129 l46 e 29 nr 1000000 chr ENSMUST00000037181-chr12---68321457-68323529 l44 e 29 nr 1500000 chr ENSMUST00000073418-chr15---76001404-76012829 l44 e 29 nr 2000000 chr ENSMUST00000032191-chr6---108101721-108103729 l45 e 29 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2267162 reads mapping to 527085 Unique genomic coordinates Making up 14437 groups Consisting of 4750 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000084828-chr12-+-117658661-117659730 l46 e 30 nr 1000000 chr ENSMUST00000142740-chr2-+-126877416-126878530 l45 e 30 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1496709 reads mapping to 560296 Unique genomic coordinates Making up 15522 groups Consisting of 5174 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165966-chr15---66764926-66766031 l44 e 31 nr 1000000 chr ENSMUST00000127678-chr4---94130621-94132731 l43 e 31 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1395584 reads mapping to 563079 Unique genomic coordinates Making up 15122 groups Consisting of 4942 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000156928-chr16-+-32988017-32989132 l44 e 32 nr 1000000 chr ENSMUST00000032729-chr7---72480418-72482532 l43 e 32 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1257112 reads mapping to 527808 Unique genomic coordinates Making up 14478 groups Consisting of 4832 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000119092-chr12-+-74798404-74799533 l44 e 33 nr 1000000 chr ENSMUST00000026254-chr19-+-46353200-46355733 l44 e 33 nr 1500000 chr ENSMUST00000159793-chr6-+-143194408-143195033 l45 e 33 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1711862 reads mapping to 540674 Unique genomic coordinates Making up 14891 groups Consisting of 4919 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000043493-chr13---70759036-70760834 l44 e 34 nr 1000000 chr ENSMUST00000146783-chr4---10672633-10673734 l43 e 34 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1350354 reads mapping to 529602 Unique genomic coordinates Making up 14440 groups Consisting of 4752 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000088018-chr15---101590431-101593935 l46 e 35 nr 1000000 chr ENSMUST00000098761-chr3-+-105255248-105256135 l45 e 35 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1432821 reads mapping to 537442 Unique genomic coordinates Making up 14767 groups Consisting of 4758 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000016685-chr15-+-85223267-85224436 l44 e 36 nr 1000000 chr ENSMUST00000084701-chr4---41621552-41622636 l43 e 36 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1431892 reads mapping to 542032 Unique genomic coordinates Making up 14756 groups Consisting of 4975 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000003762-chr17---17984015-17985837 l44 e 37 nr 1000000 chr ENSMUST00000174172-chr7-+-87448747-87450237 l43 e 37 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1178126 reads mapping to 523571 Unique genomic coordinates Making up 14373 groups Consisting of 4785 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000101401-chr12-+-58403832-58405038 l44 e 38 nr 1000000 chr ENSMUST00000028076-chr2-+-18080583-18081838 l43 e 38 nr 1500000 chr ENSMUST00000149056-chr7-+-125878282-125880538 l45 e 38 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1718640 reads mapping to 525287 Unique genomic coordinates Making up 14417 groups Consisting of 4777 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000051310-chr14---46212849-46215839 l44 e 39 nr 1000000 chr ENSMUST00000106403-chr4---117838490-117839539 l45 e 39 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1352674 reads mapping to 543074 Unique genomic coordinates Making up 14992 groups Consisting of 4949 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022310-chr14-+-17142328-17144440 l44 e 40 nr 1000000 chr ENSMUST00000166164-chr4-+-128735515-128736640 l45 e 40 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1352467 reads mapping to 531819 Unique genomic coordinates Making up 14656 groups Consisting of 4781 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000101418-chr12-+-56201827-56204041 l44 e 41 nr 1000000 chr ENSMUST00000164194-chr3---141526945-141528041 l45 e 41 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1470531 reads mapping to 559708 Unique genomic coordinates Making up 15294 groups Consisting of 5020 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022954-chr15-+-68922831-68923942 l44 e 42 nr 1000000 chr ENSMUST00000098809-chr7---14706434-14707642 l43 e 42 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1209099 reads mapping to 512193 Unique genomic coordinates Making up 14182 groups Consisting of 4650 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023352-chr16-+-15650244-15653143 l44 e 43 nr 1000000 chr ENSMUST00000032766-chr7---86761726-86762543 l43 e 43 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1155587 reads mapping to 543519 Unique genomic coordinates Making up 14950 groups Consisting of 4946 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000099715-chr16---48732023-48735644 l44 e 44 nr 1000000 chr ENSMUST00000172836-chr4---148708721-148709944 l45 e 44 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1302338 reads mapping to 535870 Unique genomic coordinates Making up 14669 groups Consisting of 4801 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000164588-chr14-+-103377437-103381745 l46 e 45 nr 1000000 chr ENSMUST00000133548-chr5-+-116888729-116889945 l45 e 45 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1321324 reads mapping to 552566 Unique genomic coordinates Making up 14950 groups Consisting of 4916 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000103542-chr12---117003544-117003846 l46 e 46 nr 1000000 chr ENSMUST00000135696-chr4---94244578-94245646 l43 e 46 nr 1500000 chr ENSMUST00000087316-chrX---140241289-140244546 l45 e 46 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1508552 reads mapping to 553948 Unique genomic coordinates Making up 15086 groups Consisting of 4881 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000167708-chr13---45829984-45831047 l44 e 47 nr 1000000 chr ENSMUST00000119374-chr4---20084987-20086047 l43 e 47 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1311792 reads mapping to 524905 Unique genomic coordinates Making up 14218 groups Consisting of 4697 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000115560-chr16-+-20179074-20180248 l44 e 48 nr 1000000 chr ENSMUST00000032585-chr7---39048847-39049948 l43 e 48 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1167560 reads mapping to 528861 Unique genomic coordinates Making up 14641 groups Consisting of 4888 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161371-chr10-+-122322764-122323349 l46 e 49 nr 1000000 chr ENSMUST00000161371-chr10-+-122322764-122323349 l46 e 49 nr 1500000 chr ENSMUST00000022013-chr13---68758920-68760249 l44 e 49 nr 2000000 chr ENSMUST00000135299-chr4-+-132222570-132223649 l45 e 49 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2325443 reads mapping to 541917 Unique genomic coordinates Making up 14839 groups Consisting of 4877 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022592-chr14---78706975-78707850 l44 e 50 nr 1000000 chr ENSMUST00000029632-chr3---82696501-82701550 l43 e 50 nr 1500000 chr ENSMUST00000146305-chr7-+-148661412-148662150 l45 e 50 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1640453 reads mapping to 547129 Unique genomic coordinates Making up 14779 groups Consisting of 5070 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000021450-chr12---76815235-76818151 l44 e 51 nr 1000000 chr ENSMUST00000127131-chr2---32142118-32143551 l43 e 51 nr 1500000 chr ENSMUST00000101670-chrX-+-23380395-23383151 l43 e 51 nr 2000000 chr ENSMUST00000101670-chrX-+-23380395-23383151 l43 e 51 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2222145 reads mapping to 511190 Unique genomic coordinates Making up 13956 groups Consisting of 4606 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000145663-chr16-+-44372147-44373752 l44 e 52 nr 1000000 chr ENSMUST00000166114-chr5---16732014-16733752 l43 e 52 nr 1500000 chr ENSMUST00000166114-chr5---16732014-16733752 l43 e 52 nr 2000000 chr ENSMUST00000098350-chr9-+-110278567-110284652 l45 e 52 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2055456 reads mapping to 561744 Unique genomic coordinates Making up 15187 groups Consisting of 5156 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023431-chr16---57168979-57171053 l44 e 53 nr 1000000 chr ENSMUST00000111839-chr6-+-141353203-141354253 l45 e 53 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1281558 reads mapping to 549423 Unique genomic coordinates Making up 15036 groups Consisting of 4997 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000167499-chr15-+-84571823-84572954 l44 e 54 nr 1000000 chr ENSMUST00000015333-chr6-+-4557483-4559254 l41 e 54 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1239008 reads mapping to 555837 Unique genomic coordinates Making up 15167 groups Consisting of 5046 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000049714-chr11-+-83832362-83833955 l44 e 55 nr 1000000 chr ENSMUST00000049714-chr11-+-83832362-83833955 l44 e 55 nr 1500000 chr ENSMUST00000049714-chr11-+-83832362-83833955 l44 e 55 nr 2000000 chr ENSMUST00000025702-chr19---6119399-6122655 l42 e 55 nr 2500000 chr ENSMUST00000093139-chr8---113334139-113339055 l45 e 55 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2573661 reads mapping to 521425 Unique genomic coordinates Making up 14328 groups Consisting of 4685 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000099441-chr13---64197618-64201156 l44 e 56 nr 1000000 chr ENSMUST00000029053-chr2-+-167757827-167758556 l45 e 56 nr 1500000 chr ENSMUST00000034987-chr9-+-86417331-86418456 l43 e 56 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1935881 reads mapping to 546668 Unique genomic coordinates Making up 14805 groups Consisting of 4990 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000166957-chr15-+-44374416-44375657 l44 e 57 nr 1000000 chr ENSMUST00000135776-chr5-+-106157242-106163257 l45 e 57 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1254446 reads mapping to 557007 Unique genomic coordinates Making up 15165 groups Consisting of 5167 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000042917-chr15-+-39123148-39124358 l44 e 58 nr 1000000 chr ENSMUST00000145167-chr5-+-30592947-30598558 l43 e 58 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1399491 reads mapping to 515398 Unique genomic coordinates Making up 14132 groups Consisting of 4720 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023382-chr16-+-44156023-44158559 l44 e 59 nr 1000000 chr ENSMUST00000043259-chr6-+-141407077-141408859 l45 e 59 nr 1500000 chr ENSMUST00000168164-chr8---13104275-13105459 l43 e 59 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1824445 reads mapping to 524624 Unique genomic coordinates Making up 14205 groups Consisting of 4917 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000108908-chr15-+-100869472-100876360 l46 e 60 nr 1000000 chr ENSMUST00000115323-chr6---27709674-27711860 l43 e 60 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1415780 reads mapping to 524224 Unique genomic coordinates Making up 14256 groups Consisting of 4854 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023762-chr15---99568596-99570661 l44 e 61 nr 1000000 chr ENSMUST00000045550-chr4---132287588-132288461 l45 e 61 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1288630 reads mapping to 528704 Unique genomic coordinates Making up 14478 groups Consisting of 4831 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000043914-chr14-+-65625583-65627462 l44 e 62 nr 1000000 chr ENSMUST00000064405-chr16---63543364-63546562 l44 e 62 nr 1500000 chr ENSMUST00000094761-chr4-+-125801827-125803562 l45 e 62 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1903898 reads mapping to 543750 Unique genomic coordinates Making up 14984 groups Consisting of 4842 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000169327-chr13-+-19721435-19724863 l44 e 63 nr 1000000 chr ENSMUST00000156519-chr4-+-62970056-62971163 l43 e 63 nr 1500000 chr ENSMUST00000111534-chr9-+-121628287-121629163 l45 e 63 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1531549 reads mapping to 522216 Unique genomic coordinates Making up 14276 groups Consisting of 4616 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000063191-chr13-+-33095932-33097064 l44 e 64 nr 1000000 chr ENSMUST00000002825-chr5-+-135691960-135694664 l45 e 64 nr 1500000 chr ENSMUST00000048250-chrX-+-82869181-82870264 l43 e 64 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1676957 reads mapping to 547721 Unique genomic coordinates Making up 15002 groups Consisting of 4987 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023617-chr16-+-36721124-36723265 l44 e 65 nr 1000000 chr ENSMUST00000042850-chr4---58070302-58071365 l43 e 65 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1491769 reads mapping to 521350 Unique genomic coordinates Making up 14339 groups Consisting of 4661 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000076840-chr17---63229855-63230666 l44 e 66 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 953500 reads mapping to 475399 Unique genomic coordinates Making up 13092 groups Consisting of 4160 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000100295-chr14-+-122546710-122547767 l46 e 67 nr 1000000 chr ENSMUST00000159827-chr6---6770189-6775067 l41 e 67 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1237677 reads mapping to 538471 Unique genomic coordinates Making up 14665 groups Consisting of 4928 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022871-chr15-+-32946357-32947468 l44 e 68 nr 1000000 chr ENSMUST00000030606-chr4---134989027-134989768 l45 e 68 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1426515 reads mapping to 549228 Unique genomic coordinates Making up 15167 groups Consisting of 4891 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000039074-chr15-+-89367946-89368969 l44 e 69 nr 1000000 chr ENSMUST00000133196-chr4-+-150199842-150200569 l45 e 69 nr 1500000 chr ENSMUST00000139358-chrX---35585780-35586869 l43 e 69 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1567327 reads mapping to 511002 Unique genomic coordinates Making up 14184 groups Consisting of 4545 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000112979-chr17-+-56792503-56795970 l44 e 70 nr 1000000 chr ENSMUST00000085809-chr7---30170575-30173670 l43 e 70 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1220300 reads mapping to 501808 Unique genomic coordinates Making up 14078 groups Consisting of 4601 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000155384-chr11-+-117472561-117475171 l46 e 71 nr 1000000 chr ENSMUST00000137128-chr4---112443696-112446271 l45 e 71 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1364369 reads mapping to 528554 Unique genomic coordinates Making up 14552 groups Consisting of 4782 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000061882-chr15---83377227-83378872 l44 e 72 nr 1000000 chr ENSMUST00000129648-chr4-+-53644588-53645272 l43 e 72 nr 1500000 chr ENSMUST00000172712-chr7---49611471-49613372 l43 e 72 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1709711 reads mapping to 549021 Unique genomic coordinates Making up 15085 groups Consisting of 5078 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000054908-chr14-+-79996055-79997773 l44 e 73 nr 1000000 chr ENSMUST00000163436-chr5-+-23911133-23913773 l43 e 73 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1297249 reads mapping to 534411 Unique genomic coordinates Making up 14709 groups Consisting of 4923 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000171691-chr17---30023892-30025574 l44 e 74 nr 1000000 chr ENSMUST00000101376-chr5-+-32634664-32636374 l43 e 74 nr 1500000 chr ENSMUST00000129704-chr5---141144476-141145574 l45 e 74 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1875516 reads mapping to 543232 Unique genomic coordinates Making up 14793 groups Consisting of 4882 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000154578-chr11---47164656-47169375 l44 e 75 nr 1000000 chr ENSMUST00000075806-chr16---29260503-29261575 l44 e 75 nr 1500000 chr ENSMUST00000075806-chr16---29260503-29261575 l44 e 75 nr 2000000 chr ENSMUST00000075806-chr16---29260503-29261575 l44 e 75 nr 2500000 chr ENSMUST00000121674-chr18---70685711-70686875 l44 e 75 nr 3000000 chr ENSMUST00000155660-chr8-+-19697004-19698275 l43 e 75 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 3119503 reads mapping to 537028 Unique genomic coordinates Making up 14862 groups Consisting of 4854 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000024599-chr17---12906327-12910776 l44 e 76 nr 1000000 chr ENSMUST00000028178-chr2---58147837-58149076 l43 e 76 nr 1500000 chr ENSMUST00000028178-chr2---58147837-58149076 l43 e 76 nr 2000000 chr ENSMUST00000028178-chr2---58147837-58149076 l43 e 76 nr 2500000 chr ENSMUST00000028178-chr2---58147837-58149076 l43 e 76 nr 3000000 chr ENSMUST00000075666-chr8---72860416-72866576 l43 e 76 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 3136023 reads mapping to 517654 Unique genomic coordinates Making up 13997 groups Consisting of 4594 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025520-chr18---61159576-61164677 l44 e 77 nr 1000000 chr ENSMUST00000145601-chr8---101924126-101925577 l45 e 77 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1284579 reads mapping to 525806 Unique genomic coordinates Making up 14543 groups Consisting of 4817 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161766-chr14-+-26355731-26357978 l44 e 78 nr 1000000 chr ENSMUST00000097504-chr18---82779497-82780578 l44 e 78 nr 1500000 chr ENSMUST00000097504-chr18---82779497-82780578 l44 e 78 nr 2000000 chr ENSMUST00000030826-chr4-+-149515787-149518278 l45 e 78 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2464352 reads mapping to 578743 Unique genomic coordinates Making up 15711 groups Consisting of 5300 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000026315-chr14---8815069-8817179 l42 e 79 nr 1000000 chr ENSMUST00000151636-chr5-+-36175202-36176279 l43 e 79 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1286315 reads mapping to 526891 Unique genomic coordinates Making up 14563 groups Consisting of 4824 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000018315-chr11---86477656-86479880 l44 e 80 nr 1000000 chr ENSMUST00000149254-chr2-+-126860280-126863080 l45 e 80 nr 1500000 chr ENSMUST00000165771-chr7---93376190-93380280 l43 e 80 nr 2000000 chr ENSMUST00000112971-chrX-+-137528642-137530680 l45 e 80 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2005327 reads mapping to 551739 Unique genomic coordinates Making up 15009 groups Consisting of 5009 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023732-chr15---98606449-98608581 l44 e 81 nr 1000000 chr ENSMUST00000028233-chr2---34894231-34895781 l43 e 81 nr 1500000 chr ENSMUST00000031366-chr5-+-124243653-124244781 l45 e 81 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1752114 reads mapping to 515460 Unique genomic coordinates Making up 14153 groups Consisting of 4681 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000021635-chr13---4131861-4132582 l42 e 82 nr 1000000 chr ENSMUST00000063332-chr2---152219347-152223782 l45 e 82 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1494623 reads mapping to 550563 Unique genomic coordinates Making up 15046 groups Consisting of 4983 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000109769-chr13---64293853-64298483 l44 e 83 nr 1000000 chr ENSMUST00000063816-chr4---57921355-57923983 l43 e 83 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1386127 reads mapping to 553877 Unique genomic coordinates Making up 15108 groups Consisting of 4942 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000172203-chr17-+-19929301-19932584 l44 e 84 nr 1000000 chr ENSMUST00000032422-chr6-+-113437565-113440284 l45 e 84 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1186213 reads mapping to 507316 Unique genomic coordinates Making up 13972 groups Consisting of 4534 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000042556-chr10---77635626-77646285 l44 e 85 nr 1000000 chr ENSMUST00000165341-chr10---107207096-107209885 l46 e 85 nr 1500000 chr ENSMUST00000165364-chr13---63498891-63499985 l44 e 85 nr 2000000 chr ENSMUST00000150035-chr2---157104428-157105285 l45 e 85 nr 2500000 chr ENSMUST00000161635-chr9---26585104-26586185 l43 e 85 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2724576 reads mapping to 548635 Unique genomic coordinates Making up 14854 groups Consisting of 4912 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000139335-chr13---26013805-26014886 l44 e 86 nr 1000000 chr ENSMUST00000028921-chr2-+-146851617-146854486 l45 e 86 nr 1500000 chr ENSMUST00000075159-chr5---76669396-76672686 l43 e 86 nr 2000000 chr ENSMUST00000156452-chrX-+-68560375-68563486 l43 e 86 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2373756 reads mapping to 550526 Unique genomic coordinates Making up 14875 groups Consisting of 5000 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000124608-chr14-+-75544482-75547887 l44 e 87 nr 1000000 chr ENSMUST00000035982-chr4---19576763-19578087 l43 e 87 nr 1500000 chr ENSMUST00000171660-chrX---90838658-90840687 l43 e 87 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1567995 reads mapping to 558374 Unique genomic coordinates Making up 15095 groups Consisting of 5051 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000063492-chr15---42909145-42910288 l44 e 88 nr 1000000 chr ENSMUST00000101471-chr5-+-28035490-28036588 l43 e 88 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1381591 reads mapping to 535457 Unique genomic coordinates Making up 14577 groups Consisting of 4797 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000004987-chr17---28739133-28740989 l44 e 89 nr 1000000 chr ENSMUST00000148563-chr6-+-121823133-121826989 l45 e 89 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1182623 reads mapping to 507293 Unique genomic coordinates Making up 13731 groups Consisting of 4606 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000114076-chr16---91068777-91069390 l44 e 90 nr 1000000 chr ENSMUST00000028689-chr2-+-91328089-91329290 l43 e 90 nr 1500000 chr ENSMUST00000115035-chrX---45207243-45209290 l43 e 90 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1645604 reads mapping to 522459 Unique genomic coordinates Making up 14340 groups Consisting of 4752 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022953-chr15---71301437-71302591 l44 e 91 nr 1000000 chr ENSMUST00000029935-chr3-+-142226570-142231291 l45 e 91 nr 1500000 chr ENSMUST00000121979-chr5-+-77073157-77075491 l43 e 91 nr 2000000 chr ENSMUST00000070863-chr9-+-74800691-74803491 l43 e 91 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2137767 reads mapping to 546355 Unique genomic coordinates Making up 15082 groups Consisting of 4884 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000136066-chr15---83411598-83413392 l44 e 92 nr 1000000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 1500000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 2000000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 2500000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 3000000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 3500000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 4000000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 4500000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 5000000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 5500000 chr ENSMUST00000120437-chr2---173809983-173810192 l45 e 92 nr 6000000 chr ENSMUST00000156941-chr7-+-147115419-147119392 l45 e 92 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 6117656 reads mapping to 525115 Unique genomic coordinates Making up 14309 groups Consisting of 4677 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000063871-chr14---56497757-56503093 l44 e 93 nr 1000000 chr ENSMUST00000172521-chr3---142491345-142492793 l45 e 93 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1480932 reads mapping to 553952 Unique genomic coordinates Making up 15000 groups Consisting of 5034 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000166296-chr16---23024413-23025494 l44 e 94 nr 1000000 chr ENSMUST00000108362-chr7---28156393-28157894 l43 e 94 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1328493 reads mapping to 564717 Unique genomic coordinates Making up 15459 groups Consisting of 5122 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000049742-chr15-+-34767110-34772095 l44 e 95 nr 1000000 chr ENSMUST00000031646-chr5-+-147656647-147657995 l45 e 95 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1226221 reads mapping to 518519 Unique genomic coordinates Making up 14028 groups Consisting of 4691 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000160087-chr13---49145353-49147396 l44 e 96 nr 1000000 chr ENSMUST00000126207-chr4-+-106756159-106760596 l45 e 96 nr 1500000 chr ENSMUST00000113947-chrX-+-90542002-90543696 l43 e 96 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1526539 reads mapping to 554713 Unique genomic coordinates Making up 15180 groups Consisting of 5081 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000133684-chr16---89817706-89818597 l44 e 97 nr 1000000 chr ENSMUST00000131628-chr5-+-31802727-31805397 l43 e 97 nr 1500000 chr ENSMUST00000033414-chrX-+-21312931-21314997 l43 e 97 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1526121 reads mapping to 525029 Unique genomic coordinates Making up 14316 groups Consisting of 4814 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000061656-chr15-+-6745396-6750398 l42 e 98 nr 1000000 chr ENSMUST00000127518-chr3-+-99689329-99689998 l43 e 98 nr 1500000 chr ENSMUST00000014421-chr5---90691784-90695098 l43 e 98 nr 2000000 chr ENSMUST00000014421-chr5---90691784-90695098 l43 e 98 nr 2500000 chr ENSMUST00000162456-chr8-+-129911910-129913898 l45 e 98 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 2630088 reads mapping to 544227 Unique genomic coordinates Making up 14838 groups Consisting of 4982 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023507-chr16-+-38089087-38091199 l44 e 99 nr 1000000 chr ENSMUST00000162348-chr5---122167675-122168599 l45 e 99 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1390003 reads mapping to 525266 Unique genomic coordinates Making up 14355 groups Consisting of 4569 clusters