Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000127711-chr4---134699336-134700200 l45 e 0 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 648473 reads mapping to 275062 Unique genomic coordinates Making up 6804 groups Consisting of 1917 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000123203-chr5---74911188-74912701 l43 e 1 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 630708 reads mapping to 288435 Unique genomic coordinates Making up 6952 groups Consisting of 2007 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000044089-chr3-+-153513123-153514402 l45 e 2 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 762461 reads mapping to 312142 Unique genomic coordinates Making up 7727 groups Consisting of 2219 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000145027-chr7---31054668-31057903 l43 e 3 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 606319 reads mapping to 288949 Unique genomic coordinates Making up 7079 groups Consisting of 2005 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000171174-chr7---50749968-50751604 l43 e 4 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 596827 reads mapping to 305589 Unique genomic coordinates Making up 7406 groups Consisting of 2093 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000146613-chr2-+-20630532-20633505 l43 e 5 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 778877 reads mapping to 310731 Unique genomic coordinates Making up 7485 groups Consisting of 2219 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000118444-chr7---35997659-35998706 l43 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 590480 reads mapping to 293839 Unique genomic coordinates Making up 7230 groups Consisting of 2037 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000163012-chr6-+-38501531-38504007 l43 e 7 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 625236 reads mapping to 304034 Unique genomic coordinates Making up 7440 groups Consisting of 2122 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000035340-chr14---21395195-21397308 l44 e 8 nr 1000000 chr ENSMUST00000146526-chr8---123102533-123106608 l45 e 8 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1178395 reads mapping to 290389 Unique genomic coordinates Making up 7025 groups Consisting of 2023 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000090852-chr2-+-69703747-69706109 l43 e 9 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 848401 reads mapping to 283912 Unique genomic coordinates Making up 7030 groups Consisting of 1976 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000140495-chr4---136992494-136994310 l45 e 10 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 674377 reads mapping to 293198 Unique genomic coordinates Making up 7046 groups Consisting of 2076 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000117277-chr4---73158649-73159511 l43 e 11 nr 1000000 chr ENSMUST00000004201-chr9---20601166-20608111 l43 e 11 nr 1500000 chr ENSMUST00000004201-chr9---20601166-20608111 l43 e 11 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1790547 reads mapping to 285428 Unique genomic coordinates Making up 6879 groups Consisting of 1999 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023741-chr15---98669208-98678412 l44 e 12 nr 1000000 chr ENSMUST00000156215-chr17-+-29418505-29422112 l44 e 12 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1349751 reads mapping to 302156 Unique genomic coordinates Making up 7374 groups Consisting of 2093 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000117367-chr4-+-121756168-121757313 l45 e 13 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 735880 reads mapping to 305340 Unique genomic coordinates Making up 7347 groups Consisting of 2143 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000129064-chr7-+-36190137-36191314 l43 e 14 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 647789 reads mapping to 307421 Unique genomic coordinates Making up 7441 groups Consisting of 2118 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000135586-chr19-+-3791720-3793715 l42 e 15 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 791519 reads mapping to 302469 Unique genomic coordinates Making up 7399 groups Consisting of 2072 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000107381-chr7-+-87401231-87402416 l43 e 16 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 591502 reads mapping to 290128 Unique genomic coordinates Making up 7050 groups Consisting of 2024 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000162103-chr5---21457676-21458317 l43 e 17 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 673947 reads mapping to 303561 Unique genomic coordinates Making up 7324 groups Consisting of 2095 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000102705-chr4---115769521-115773718 l45 e 18 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 856780 reads mapping to 292111 Unique genomic coordinates Making up 6981 groups Consisting of 2017 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000112880-chr6---116577927-116578719 l45 e 19 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 610360 reads mapping to 310112 Unique genomic coordinates Making up 7664 groups Consisting of 2209 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000005452-chr13-+-55266751-55270120 l44 e 20 nr 1000000 chr ENSMUST00000132428-chrX-+-53759050-53761020 l43 e 20 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1116281 reads mapping to 277495 Unique genomic coordinates Making up 6872 groups Consisting of 1960 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000127896-chr9-+-66793898-66797321 l43 e 21 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 524195 reads mapping to 274175 Unique genomic coordinates Making up 6737 groups Consisting of 1817 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000149348-chr4---102656034-102657222 l45 e 22 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 862189 reads mapping to 298022 Unique genomic coordinates Making up 7226 groups Consisting of 2022 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000112435-chr5---111162238-111163423 l45 e 23 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 657295 reads mapping to 301043 Unique genomic coordinates Making up 7298 groups Consisting of 2053 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000122177-chr4---60432032-60434824 l43 e 24 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 652900 reads mapping to 313280 Unique genomic coordinates Making up 7748 groups Consisting of 2228 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000111080-chr5---137512788-137513925 l45 e 25 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 663540 reads mapping to 293704 Unique genomic coordinates Making up 7187 groups Consisting of 2073 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000099682-chr2---101424901-101427126 l45 e 26 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 849706 reads mapping to 312410 Unique genomic coordinates Making up 7675 groups Consisting of 2166 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000159140-chr9-+-61250268-61258427 l43 e 27 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 529098 reads mapping to 281035 Unique genomic coordinates Making up 6838 groups Consisting of 1934 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000000896-chr2---154411494-154414328 l45 e 28 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 764979 reads mapping to 294612 Unique genomic coordinates Making up 7152 groups Consisting of 2014 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000031622-chr5---144784193-144785929 l45 e 29 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 626034 reads mapping to 290046 Unique genomic coordinates Making up 7004 groups Consisting of 2025 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000069543-chr5-+-92416501-92419330 l43 e 30 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 662906 reads mapping to 306838 Unique genomic coordinates Making up 7572 groups Consisting of 2164 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000089634-chr2-+-127953856-127957231 l45 e 31 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 845441 reads mapping to 299952 Unique genomic coordinates Making up 7209 groups Consisting of 2077 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000047023-chr4-+-84738041-84739232 l43 e 32 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 700316 reads mapping to 299994 Unique genomic coordinates Making up 7319 groups Consisting of 2103 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000120632-chr18---42822264-42823433 l44 e 33 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 772250 reads mapping to 295894 Unique genomic coordinates Making up 7258 groups Consisting of 2069 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000111876-chr5-+-121067649-121072334 l45 e 34 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 799281 reads mapping to 287913 Unique genomic coordinates Making up 7048 groups Consisting of 2060 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000105947-chr7-+-149690693-149691935 l45 e 35 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 570300 reads mapping to 298861 Unique genomic coordinates Making up 7309 groups Consisting of 2074 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000135998-chr7---104706141-104707236 l45 e 36 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 618883 reads mapping to 291936 Unique genomic coordinates Making up 7210 groups Consisting of 2045 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000098499-chr8---95890084-95891237 l43 e 37 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 791359 reads mapping to 280589 Unique genomic coordinates Making up 6916 groups Consisting of 1948 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000040872-chr2-+-160726894-160731738 l45 e 38 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 706328 reads mapping to 285838 Unique genomic coordinates Making up 6969 groups Consisting of 1992 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000098110-chr7---117201501-117204839 l45 e 39 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 625507 reads mapping to 296778 Unique genomic coordinates Making up 7339 groups Consisting of 2095 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000125529-chr2-+-181236110-181238140 l45 e 40 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 781512 reads mapping to 294942 Unique genomic coordinates Making up 7349 groups Consisting of 2079 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000124316-chr5-+-114776343-114777441 l45 e 41 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 622032 reads mapping to 311910 Unique genomic coordinates Making up 7720 groups Consisting of 2177 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000169307-chr9---39762343-39764542 l43 e 42 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 850242 reads mapping to 285519 Unique genomic coordinates Making up 6985 groups Consisting of 1987 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000109621-chr8---92781274-92782543 l43 e 43 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 556486 reads mapping to 295943 Unique genomic coordinates Making up 7266 groups Consisting of 2107 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000037991-chr7-+-119476843-119479444 l45 e 44 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 583094 reads mapping to 294151 Unique genomic coordinates Making up 7223 groups Consisting of 2076 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000125041-chr7-+-36194100-36196045 l43 e 45 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 586701 reads mapping to 299600 Unique genomic coordinates Making up 7319 groups Consisting of 2124 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000121183-chr6---33325111-33327446 l43 e 46 nr 1000000 chr ENSMUST00000071044-chr6-+-72504767-72506746 l43 e 46 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1258218 reads mapping to 311752 Unique genomic coordinates Making up 7477 groups Consisting of 2190 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000034776-chr9-+-62693261-62695947 l43 e 47 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 525553 reads mapping to 279141 Unique genomic coordinates Making up 7004 groups Consisting of 1958 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000091851-chr18---74088140-74091248 l44 e 48 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 775518 reads mapping to 289943 Unique genomic coordinates Making up 7062 groups Consisting of 1970 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025305-chr17---36047324-36049849 l44 e 49 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 834932 reads mapping to 298346 Unique genomic coordinates Making up 7264 groups Consisting of 2109 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000107675-chr3-+-84777825-84779050 l43 e 50 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 706857 reads mapping to 297837 Unique genomic coordinates Making up 7302 groups Consisting of 2033 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000040218-chr8-+-59068355-59069551 l43 e 51 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 585390 reads mapping to 279416 Unique genomic coordinates Making up 6958 groups Consisting of 2002 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000030080-chr4-+-59891594-59892752 l43 e 52 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 701840 reads mapping to 302332 Unique genomic coordinates Making up 7344 groups Consisting of 2130 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000100203-chr15-+-100001051-100002653 l46 e 53 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 927275 reads mapping to 301515 Unique genomic coordinates Making up 7349 groups Consisting of 2171 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000167323-chr6-+-134933100-134936854 l45 e 54 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 984182 reads mapping to 305699 Unique genomic coordinates Making up 7509 groups Consisting of 2209 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000137058-chr8---73901788-73902955 l43 e 55 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 539408 reads mapping to 286910 Unique genomic coordinates Making up 7151 groups Consisting of 1993 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000112792-chr14-+-3950019-3952556 l42 e 56 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 937281 reads mapping to 301233 Unique genomic coordinates Making up 7323 groups Consisting of 2111 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000036691-chr2-+-32085631-32090057 l43 e 57 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 774613 reads mapping to 298169 Unique genomic coordinates Making up 7345 groups Consisting of 2139 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165117-chr5-+-3428491-3429658 l41 e 58 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 689636 reads mapping to 282845 Unique genomic coordinates Making up 6919 groups Consisting of 1985 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000085040-chr3---58900370-58902859 l43 e 59 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 712845 reads mapping to 281767 Unique genomic coordinates Making up 6954 groups Consisting of 2041 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000045986-chr6---85086317-85087760 l43 e 60 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 625410 reads mapping to 282348 Unique genomic coordinates Making up 6934 groups Consisting of 2031 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000120622-chr9---50496208-50497261 l43 e 61 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 592263 reads mapping to 291680 Unique genomic coordinates Making up 7220 groups Consisting of 2037 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000019878-chr7---3611700-3613462 l41 e 62 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 588524 reads mapping to 300973 Unique genomic coordinates Making up 7370 groups Consisting of 2067 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000108379-chr7-+-27985073-27986663 l43 e 63 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 589858 reads mapping to 287751 Unique genomic coordinates Making up 6944 groups Consisting of 2033 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000121994-chr2-+-87711838-87712364 l43 e 64 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 819580 reads mapping to 304426 Unique genomic coordinates Making up 7522 groups Consisting of 2122 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000115124-chr16-+-32677480-32681865 l44 e 65 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 907506 reads mapping to 287595 Unique genomic coordinates Making up 7023 groups Consisting of 2013 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000121979-chr5-+-77025882-77026966 l43 e 66 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 640107 reads mapping to 261908 Unique genomic coordinates Making up 6367 groups Consisting of 1827 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000032865-chr7---91742723-91744567 l43 e 67 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 565840 reads mapping to 284795 Unique genomic coordinates Making up 6996 groups Consisting of 2091 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000154898-chr4-+-147981550-147982668 l45 e 68 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 675120 reads mapping to 304310 Unique genomic coordinates Making up 7370 groups Consisting of 2034 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000075896-chr8-+-127539055-127540169 l45 e 69 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 535626 reads mapping to 283604 Unique genomic coordinates Making up 7049 groups Consisting of 2003 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000142678-chr7-+-87786355-87789270 l43 e 70 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 597875 reads mapping to 284007 Unique genomic coordinates Making up 6970 groups Consisting of 1987 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000106423-chr7---132839475-132840571 l45 e 71 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 584693 reads mapping to 287931 Unique genomic coordinates Making up 6985 groups Consisting of 2051 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000075190-chr8---105193453-105194572 l45 e 72 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 656287 reads mapping to 300883 Unique genomic coordinates Making up 7418 groups Consisting of 2132 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000101448-chr5-+-30664786-30667273 l43 e 73 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 695272 reads mapping to 293384 Unique genomic coordinates Making up 7190 groups Consisting of 2029 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000031092-chr5---65684397-65685674 l43 e 74 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 823493 reads mapping to 298787 Unique genomic coordinates Making up 7312 groups Consisting of 2094 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000005953-chr2-+-122590973-122591675 l45 e 75 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 765587 reads mapping to 298111 Unique genomic coordinates Making up 7310 groups Consisting of 2016 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000070326-chr9-+-83755269-83757676 l43 e 76 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 520353 reads mapping to 282045 Unique genomic coordinates Making up 6880 groups Consisting of 2018 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000170521-chr14-+-3030002-3033477 l42 e 77 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 974987 reads mapping to 294745 Unique genomic coordinates Making up 7258 groups Consisting of 2059 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000142799-chr3-+-87505580-87506978 l43 e 78 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 791835 reads mapping to 316180 Unique genomic coordinates Making up 7672 groups Consisting of 2160 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000126983-chr7---26456216-26459179 l43 e 79 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 756427 reads mapping to 287216 Unique genomic coordinates Making up 7032 groups Consisting of 1932 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000124014-chr14---32393132-32394280 l44 e 80 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 996982 reads mapping to 297022 Unique genomic coordinates Making up 7196 groups Consisting of 2096 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000024594-chr17-+-12312150-12312781 l44 e 81 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 851673 reads mapping to 276927 Unique genomic coordinates Making up 6739 groups Consisting of 1943 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000143430-chr6-+-86388702-86389482 l43 e 82 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 662485 reads mapping to 300840 Unique genomic coordinates Making up 7251 groups Consisting of 2088 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000130294-chr3-+-30775657-30778383 l43 e 83 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 973504 reads mapping to 307331 Unique genomic coordinates Making up 7479 groups Consisting of 2152 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000055190-chr5---145079298-145080384 l45 e 84 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 614008 reads mapping to 276684 Unique genomic coordinates Making up 6788 groups Consisting of 1938 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161779-chr6---38652938-38654185 l43 e 85 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 609413 reads mapping to 299010 Unique genomic coordinates Making up 7316 groups Consisting of 2071 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000098696-chr8---70212981-70221586 l43 e 86 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 561356 reads mapping to 294387 Unique genomic coordinates Making up 7231 groups Consisting of 2087 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000031521-chr5-+-139829294-139832987 l45 e 87 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 641134 reads mapping to 304079 Unique genomic coordinates Making up 7528 groups Consisting of 2137 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000131518-chr3-+-157710865-157711988 l45 e 88 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 689119 reads mapping to 288899 Unique genomic coordinates Making up 7053 groups Consisting of 2015 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165418-chr16-+-33494931-33503989 l44 e 89 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 784360 reads mapping to 279358 Unique genomic coordinates Making up 6819 groups Consisting of 1984 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000075387-chr5---112856896-112858090 l45 e 90 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 756327 reads mapping to 292787 Unique genomic coordinates Making up 7116 groups Consisting of 2018 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000029803-chr3-+-138208785-138209891 l45 e 91 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 777825 reads mapping to 312127 Unique genomic coordinates Making up 7648 groups Consisting of 2137 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000103150-chr2-+-153499223-153504792 l45 e 92 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 774601 reads mapping to 294131 Unique genomic coordinates Making up 7220 groups Consisting of 2010 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000163038-chr8---3617555-3619593 l41 e 93 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 579821 reads mapping to 296138 Unique genomic coordinates Making up 7322 groups Consisting of 2062 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000169020-chr8---113683199-113688294 l45 e 94 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 554874 reads mapping to 303111 Unique genomic coordinates Making up 7367 groups Consisting of 2094 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000119083-chr7-+-88269254-88270395 l43 e 95 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 630096 reads mapping to 285644 Unique genomic coordinates Making up 6998 groups Consisting of 2022 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000047510-chr6---124766502-124775696 l45 e 96 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 593432 reads mapping to 305363 Unique genomic coordinates Making up 7583 groups Consisting of 2144 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000030014-chr4-+-46164388-46166497 l43 e 97 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 897870 reads mapping to 297234 Unique genomic coordinates Making up 7234 groups Consisting of 2104 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000075095-chr6-+-123764906-123766298 l45 e 98 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 599228 reads mapping to 297126 Unique genomic coordinates Making up 7333 groups Consisting of 2170 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000114446-chr6-+-51427937-51429099 l43 e 99 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 599699 reads mapping to 296085 Unique genomic coordinates Making up 7291 groups Consisting of 2079 clusters