Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000069345-chr16-+-33919371-33920800 l44 e 0 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 832424 reads mapping to 292908 Unique genomic coordinates Making up 7477 groups Consisting of 2125 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000059155-chr5-+-28402831-28405201 l43 e 1 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 702251 reads mapping to 298374 Unique genomic coordinates Making up 7684 groups Consisting of 2188 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000168092-chr5---99656507-99657602 l43 e 2 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 709968 reads mapping to 331793 Unique genomic coordinates Making up 8494 groups Consisting of 2446 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000048957-chr5-+-103996545-103997703 l45 e 3 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 642785 reads mapping to 304171 Unique genomic coordinates Making up 7885 groups Consisting of 2326 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165057-chr3---101392429-101397004 l45 e 4 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 765971 reads mapping to 321048 Unique genomic coordinates Making up 8102 groups Consisting of 2391 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000114861-chr2-+-10325565-10326805 l43 e 5 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 827861 reads mapping to 322622 Unique genomic coordinates Making up 8159 groups Consisting of 2291 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000046288-chr17-+-31657060-31657706 l44 e 6 nr 1000000 chr ENSMUST00000107209-chr3---94985688-94993706 l43 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1211191 reads mapping to 307476 Unique genomic coordinates Making up 7828 groups Consisting of 2274 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000025004-chr17-+-55933406-55934507 l44 e 7 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 932986 reads mapping to 314869 Unique genomic coordinates Making up 8020 groups Consisting of 2309 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000105691-chr4-+-149016804-149023008 l45 e 8 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 724036 reads mapping to 302668 Unique genomic coordinates Making up 7737 groups Consisting of 2173 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000129001-chr5-+-115253066-115256209 l45 e 9 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 638749 reads mapping to 297318 Unique genomic coordinates Making up 7588 groups Consisting of 2234 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000167713-chr17-+-40713034-40714110 l44 e 10 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 871678 reads mapping to 303764 Unique genomic coordinates Making up 7716 groups Consisting of 2287 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000063524-chr5---26425208-26429711 l43 e 11 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 688144 reads mapping to 298937 Unique genomic coordinates Making up 7701 groups Consisting of 2198 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000167054-chr2---181041164-181042612 l45 e 12 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 742032 reads mapping to 318491 Unique genomic coordinates Making up 8110 groups Consisting of 2258 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000159574-chr13-+-104918809-104919913 l46 e 13 nr 1000000 chr ENSMUST00000159574-chr13-+-104918809-104919913 l46 e 13 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1497413 reads mapping to 318713 Unique genomic coordinates Making up 8175 groups Consisting of 2340 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000117097-chr4---143184965-143187514 l45 e 14 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 698584 reads mapping to 320435 Unique genomic coordinates Making up 8158 groups Consisting of 2338 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000087264-chr5-+-66212547-66213715 l43 e 15 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 696455 reads mapping to 316434 Unique genomic coordinates Making up 8179 groups Consisting of 2304 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000136842-chr2---165723916-165724516 l45 e 16 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 717692 reads mapping to 305426 Unique genomic coordinates Making up 7761 groups Consisting of 2301 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000094408-chr4-+-154814848-154817217 l45 e 17 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 737135 reads mapping to 324029 Unique genomic coordinates Making up 8348 groups Consisting of 2479 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000022246-chr13-+-119503506-119505018 l46 e 18 nr 1000000 chr ENSMUST00000160005-chr8-+-116973917-116977718 l45 e 18 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1046036 reads mapping to 312730 Unique genomic coordinates Making up 8006 groups Consisting of 2279 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000111613-chr2---84876947-84877619 l43 e 19 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 820209 reads mapping to 331003 Unique genomic coordinates Making up 8436 groups Consisting of 2363 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000032835-chr7-+-86241053-86246620 l43 e 20 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 576211 reads mapping to 298300 Unique genomic coordinates Making up 7579 groups Consisting of 2252 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000135778-chr6-+-88857070-88860221 l43 e 21 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 602509 reads mapping to 294591 Unique genomic coordinates Making up 7583 groups Consisting of 2134 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000127139-chr3-+-27855567-27856322 l43 e 22 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 715284 reads mapping to 310633 Unique genomic coordinates Making up 7935 groups Consisting of 2257 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000137477-chr4---82230952-82233223 l43 e 23 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 796306 reads mapping to 313391 Unique genomic coordinates Making up 8029 groups Consisting of 2281 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000098611-chr3-+-130893441-130894524 l45 e 24 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 679249 reads mapping to 321668 Unique genomic coordinates Making up 8319 groups Consisting of 2417 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000154896-chr11-+-100898973-100901725 l46 e 25 nr 1000000 chr ENSMUST00000042163-chr5-+-121866886-121868525 l45 e 25 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1188894 reads mapping to 309435 Unique genomic coordinates Making up 7898 groups Consisting of 2213 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000087210-chr17-+-36062647-36069226 l44 e 26 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 975569 reads mapping to 325899 Unique genomic coordinates Making up 8391 groups Consisting of 2481 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000167123-chr16-+-21211168-21213527 l44 e 27 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 999824 reads mapping to 300773 Unique genomic coordinates Making up 7649 groups Consisting of 2194 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000003710-chr6-+-86914971-86916128 l43 e 28 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 742876 reads mapping to 305457 Unique genomic coordinates Making up 7883 groups Consisting of 2216 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000029240-chr3-+-28617091-28618929 l43 e 29 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 713488 reads mapping to 299697 Unique genomic coordinates Making up 7796 groups Consisting of 2196 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000090522-chr16---3861528-3867230 l42 e 30 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 886198 reads mapping to 321333 Unique genomic coordinates Making up 8304 groups Consisting of 2368 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000030902-chr4---153690234-153695531 l45 e 31 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 657943 reads mapping to 319272 Unique genomic coordinates Making up 8207 groups Consisting of 2385 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000019913-chr10-+-34327112-34331032 l44 e 32 nr 1000000 chr ENSMUST00000081921-chr4---118233900-118235032 l45 e 32 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1162053 reads mapping to 313734 Unique genomic coordinates Making up 7922 groups Consisting of 2291 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000036296-chr3---101667913-101669033 l45 e 33 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 676997 reads mapping to 312127 Unique genomic coordinates Making up 7974 groups Consisting of 2268 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000074355-chr17-+-28292337-28294634 l44 e 34 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 973166 reads mapping to 303372 Unique genomic coordinates Making up 7771 groups Consisting of 2258 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000113853-chr2-+-28709791-28710835 l43 e 35 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 792317 reads mapping to 323437 Unique genomic coordinates Making up 8207 groups Consisting of 2386 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000023538-chr16-+-34929420-34930536 l44 e 36 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 895448 reads mapping to 308514 Unique genomic coordinates Making up 7860 groups Consisting of 2209 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000058524-chr6---38237396-38243637 l43 e 37 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 642273 reads mapping to 297644 Unique genomic coordinates Making up 7610 groups Consisting of 2192 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000114787-chr16---37115028-37116638 l44 e 38 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 916425 reads mapping to 295811 Unique genomic coordinates Making up 7522 groups Consisting of 2154 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000126719-chr4---46506653-46509139 l43 e 39 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 738854 reads mapping to 317818 Unique genomic coordinates Making up 8059 groups Consisting of 2355 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000094522-chr4-+-143440083-143443540 l45 e 40 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 721598 reads mapping to 311670 Unique genomic coordinates Making up 8055 groups Consisting of 2289 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000039205-chr17-+-80582032-80584441 l44 e 41 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 863133 reads mapping to 329278 Unique genomic coordinates Making up 8391 groups Consisting of 2294 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161956-chr3-+-65157689-65162742 l43 e 42 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 865348 reads mapping to 303591 Unique genomic coordinates Making up 7739 groups Consisting of 2242 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000111832-chr6---141930073-141931343 l45 e 43 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 615097 reads mapping to 314230 Unique genomic coordinates Making up 8117 groups Consisting of 2355 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000106919-chr4---101507574-101511244 l45 e 44 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 840832 reads mapping to 306720 Unique genomic coordinates Making up 7869 groups Consisting of 2305 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000021550-chr12-+-80250356-80253545 l44 e 45 nr 1000000 chr ENSMUST00000171654-chr9---59814738-59820845 l43 e 45 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1043954 reads mapping to 319621 Unique genomic coordinates Making up 8233 groups Consisting of 2315 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000112771-chr5-+-104602527-104609146 l45 e 46 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 647886 reads mapping to 323589 Unique genomic coordinates Making up 8344 groups Consisting of 2376 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000124191-chr7-+-91724860-91726847 l43 e 47 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 567802 reads mapping to 298095 Unique genomic coordinates Making up 7853 groups Consisting of 2168 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000094120-chr5-+-145617256-145618948 l45 e 48 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 681163 reads mapping to 306015 Unique genomic coordinates Making up 7790 groups Consisting of 2286 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000053570-chr11-+-11387174-11389149 l44 e 49 nr 1000000 chr ENSMUST00000142572-chr7-+-148445089-148448649 l45 e 49 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1054637 reads mapping to 316474 Unique genomic coordinates Making up 7994 groups Consisting of 2276 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000109468-chr2-+-160542623-160543750 l45 e 50 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 855039 reads mapping to 314979 Unique genomic coordinates Making up 7957 groups Consisting of 2327 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000016279-chr5---151376075-151377151 l45 e 51 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 627180 reads mapping to 291855 Unique genomic coordinates Making up 7493 groups Consisting of 2132 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000106307-chr4-+-119794977-119796152 l45 e 52 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 763721 reads mapping to 320345 Unique genomic coordinates Making up 8178 groups Consisting of 2306 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000107508-chr11-+-98490161-98491753 l44 e 53 nr 1000000 chr ENSMUST00000073149-chr8-+-107878544-107883853 l45 e 53 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1071963 reads mapping to 317171 Unique genomic coordinates Making up 8225 groups Consisting of 2359 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000029833-chr3-+-154850128-154851854 l45 e 54 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 915314 reads mapping to 317174 Unique genomic coordinates Making up 8226 groups Consisting of 2367 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000064355-chr4-+-138983450-138986755 l45 e 55 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 661208 reads mapping to 303836 Unique genomic coordinates Making up 7819 groups Consisting of 2210 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000058440-chr5-+-125230631-125231756 l45 e 56 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 627824 reads mapping to 312051 Unique genomic coordinates Making up 8026 groups Consisting of 2357 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000069195-chr4-+-135845378-135849857 l45 e 57 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 655540 reads mapping to 319528 Unique genomic coordinates Making up 8330 groups Consisting of 2387 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000109822-chr11---5800823-5803758 l42 e 58 nr 1000000 chr ENSMUST00000123755-chr5-+-35155001-35157358 l43 e 58 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1147043 reads mapping to 300452 Unique genomic coordinates Making up 7694 groups Consisting of 2184 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000107504-chr7---71920090-71922259 l43 e 59 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 568856 reads mapping to 298218 Unique genomic coordinates Making up 7782 groups Consisting of 2216 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000112950-chr2-+-36639796-36640360 l43 e 60 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 920577 reads mapping to 304248 Unique genomic coordinates Making up 7802 groups Consisting of 2279 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000160265-chr6-+-8182550-8184861 l41 e 61 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 705335 reads mapping to 306413 Unique genomic coordinates Making up 7840 groups Consisting of 2271 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000102698-chr2-+-72035894-72037462 l43 e 62 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 812125 reads mapping to 320993 Unique genomic coordinates Making up 8136 groups Consisting of 2366 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000101426-chr6-+-48793284-48795363 l43 e 63 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 605658 reads mapping to 304891 Unique genomic coordinates Making up 7847 groups Consisting of 2282 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000140403-chr4---140107211-140109064 l45 e 64 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 705426 reads mapping to 319892 Unique genomic coordinates Making up 8247 groups Consisting of 2303 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000066439-chr19-+-37652410-37653565 l44 e 65 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 884852 reads mapping to 302804 Unique genomic coordinates Making up 7861 groups Consisting of 2235 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165805-chrX-+-130457675-130458866 l45 e 66 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 520434 reads mapping to 275261 Unique genomic coordinates Making up 6946 groups Consisting of 1996 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000106396-chr3-+-126510626-126511667 l45 e 67 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 738020 reads mapping to 306273 Unique genomic coordinates Making up 7872 groups Consisting of 2302 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000077751-chr4-+-145885513-145887868 l45 e 68 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 736712 reads mapping to 325487 Unique genomic coordinates Making up 8310 groups Consisting of 2399 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161196-chr4-+-119274514-119277469 l45 e 69 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 814055 reads mapping to 303762 Unique genomic coordinates Making up 7751 groups Consisting of 2226 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000040465-chr3---144746550-144748570 l45 e 70 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 871105 reads mapping to 299008 Unique genomic coordinates Making up 7600 groups Consisting of 2160 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000071968-chr5---115084025-115086971 l45 e 71 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 632125 reads mapping to 302512 Unique genomic coordinates Making up 7818 groups Consisting of 2234 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000029946-chr4-+-33081507-33083572 l43 e 72 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 751410 reads mapping to 320173 Unique genomic coordinates Making up 8188 groups Consisting of 2321 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000084852-chr7-+-109158847-109163473 l45 e 73 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 697429 reads mapping to 299186 Unique genomic coordinates Making up 7658 groups Consisting of 2178 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000163724-chr2-+-152395074-152395274 l45 e 74 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 752780 reads mapping to 317076 Unique genomic coordinates Making up 8074 groups Consisting of 2278 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000123619-chr3-+-113792550-113793675 l45 e 75 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 785419 reads mapping to 314426 Unique genomic coordinates Making up 8082 groups Consisting of 2431 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000002502-chr3-+-20015958-20018376 l43 e 76 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 740886 reads mapping to 297585 Unique genomic coordinates Making up 7591 groups Consisting of 2159 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000019118-chr5---114200712-114202977 l45 e 77 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 656878 reads mapping to 308533 Unique genomic coordinates Making up 7934 groups Consisting of 2274 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000136669-chr4---94252451-94254778 l43 e 78 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 814069 reads mapping to 328086 Unique genomic coordinates Making up 8398 groups Consisting of 2367 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000131405-chr18-+-30470301-30471479 l44 e 79 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 784919 reads mapping to 306207 Unique genomic coordinates Making up 7755 groups Consisting of 2228 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000111038-chr5---137924248-137927580 l45 e 80 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 619786 reads mapping to 311777 Unique genomic coordinates Making up 8148 groups Consisting of 2334 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000028233-chr2---34894231-34895781 l43 e 81 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 760812 reads mapping to 297081 Unique genomic coordinates Making up 7677 groups Consisting of 2187 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000113312-chr6---100523075-100524282 l45 e 82 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 626763 reads mapping to 314085 Unique genomic coordinates Making up 8037 groups Consisting of 2273 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000113516-chr5---76373627-76374483 l43 e 83 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 688303 reads mapping to 325348 Unique genomic coordinates Making up 8334 groups Consisting of 2418 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000154982-chr17---24247315-24248584 l44 e 84 nr 1000000 chr ENSMUST00000035142-chr9-+-102783484-102784584 l45 e 84 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1029935 reads mapping to 297903 Unique genomic coordinates Making up 7578 groups Consisting of 2182 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000075812-chr5-+-34196759-34198885 l43 e 85 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 957777 reads mapping to 316296 Unique genomic coordinates Making up 8210 groups Consisting of 2305 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000036060-chr13---117091319-117092486 l46 e 86 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 928643 reads mapping to 309763 Unique genomic coordinates Making up 7866 groups Consisting of 2309 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000060642-chr15-+-91529814-91531587 l44 e 87 nr 1000000 chr ENSMUST00000147842-chr9-+-55889652-55890987 l43 e 87 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1046955 reads mapping to 318761 Unique genomic coordinates Making up 8022 groups Consisting of 2347 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000167134-chr18-+-58089309-58090388 l44 e 88 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 859648 reads mapping to 307851 Unique genomic coordinates Making up 7814 groups Consisting of 2244 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000136041-chr5-+-116024088-116031289 l45 e 89 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 632042 reads mapping to 295526 Unique genomic coordinates Making up 7604 groups Consisting of 2128 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000100037-chr2---70889229-70890290 l43 e 90 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 771082 reads mapping to 301037 Unique genomic coordinates Making up 7767 groups Consisting of 2199 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000095585-chr13---81644598-81645691 l44 e 91 nr 1000000 chr ENSMUST00000050183-chr9-+-60714739-60715791 l43 e 91 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1024019 reads mapping to 327651 Unique genomic coordinates Making up 8370 groups Consisting of 2347 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000094665-chr2---120100470-120101692 l45 e 92 nr 1000000 chr ENSMUST00000094665-chr2---120100470-120101692 l45 e 92 nr 1500000 chr ENSMUST00000110241-chr8-+-71335310-71336392 l43 e 92 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1553689 reads mapping to 313738 Unique genomic coordinates Making up 7956 groups Consisting of 2320 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000031288-chr5-+-112759611-112767093 l45 e 93 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 674699 reads mapping to 315219 Unique genomic coordinates Making up 8076 groups Consisting of 2325 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000087721-chr17---32320715-32322994 l44 e 94 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 877301 reads mapping to 331755 Unique genomic coordinates Making up 8448 groups Consisting of 2417 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000115245-chr5---20802252-20803995 l43 e 95 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 679609 reads mapping to 303311 Unique genomic coordinates Making up 7770 groups Consisting of 2231 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000011934-chr2---76542037-76571196 l43 e 96 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 817508 reads mapping to 329267 Unique genomic coordinates Making up 8425 groups Consisting of 2403 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000160630-chr5---137612427-137614997 l45 e 97 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 651579 reads mapping to 309554 Unique genomic coordinates Making up 7968 groups Consisting of 2270 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000160014-chr19-+-4879621-4880898 l42 e 98 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 818750 reads mapping to 313786 Unique genomic coordinates Making up 7973 groups Consisting of 2330 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000119874-chr4-+-60256108-60256899 l43 e 99 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 786655 reads mapping to 311786 Unique genomic coordinates Making up 8053 groups Consisting of 2241 clusters