Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 465926 reads mapping to 185012 Unique genomic coordinates Making up 4056 groups Consisting of 1098 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 402065 reads mapping to 188089 Unique genomic coordinates Making up 4219 groups Consisting of 1181 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 408845 reads mapping to 210147 Unique genomic coordinates Making up 4640 groups Consisting of 1318 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 367071 reads mapping to 191782 Unique genomic coordinates Making up 4280 groups Consisting of 1201 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 440575 reads mapping to 203850 Unique genomic coordinates Making up 4493 groups Consisting of 1255 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 476624 reads mapping to 204648 Unique genomic coordinates Making up 4489 groups Consisting of 1196 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000046288-chr17-+-31657060-31657706 l44 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 689568 reads mapping to 194045 Unique genomic coordinates Making up 4307 groups Consisting of 1210 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000094053-chr7-+-130329577-130331507 l45 e 7 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 547167 reads mapping to 199258 Unique genomic coordinates Making up 4485 groups Consisting of 1238 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 413321 reads mapping to 191312 Unique genomic coordinates Making up 4248 groups Consisting of 1128 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 369614 reads mapping to 187512 Unique genomic coordinates Making up 4174 groups Consisting of 1168 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 491789 reads mapping to 192334 Unique genomic coordinates Making up 4213 groups Consisting of 1195 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 391043 reads mapping to 188175 Unique genomic coordinates Making up 4222 groups Consisting of 1169 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 424637 reads mapping to 201267 Unique genomic coordinates Making up 4479 groups Consisting of 1207 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000159574-chr13-+-104918809-104919913 l46 e 13 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 845782 reads mapping to 202021 Unique genomic coordinates Making up 4500 groups Consisting of 1269 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 402073 reads mapping to 203013 Unique genomic coordinates Making up 4421 groups Consisting of 1223 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 396623 reads mapping to 200149 Unique genomic coordinates Making up 4532 groups Consisting of 1222 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 406086 reads mapping to 193493 Unique genomic coordinates Making up 4341 groups Consisting of 1263 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 413112 reads mapping to 205290 Unique genomic coordinates Making up 4668 groups Consisting of 1314 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000153277-chr7---134848502-134850818 l45 e 18 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 607683 reads mapping to 197657 Unique genomic coordinates Making up 4499 groups Consisting of 1246 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 472787 reads mapping to 210005 Unique genomic coordinates Making up 4650 groups Consisting of 1258 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 327438 reads mapping to 188315 Unique genomic coordinates Making up 4219 groups Consisting of 1207 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 344225 reads mapping to 185932 Unique genomic coordinates Making up 4152 groups Consisting of 1156 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 410387 reads mapping to 196451 Unique genomic coordinates Making up 4367 groups Consisting of 1179 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 452290 reads mapping to 197796 Unique genomic coordinates Making up 4502 groups Consisting of 1212 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 382703 reads mapping to 202576 Unique genomic coordinates Making up 4616 groups Consisting of 1303 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165555-chr18-+-10751321-10752525 l44 e 25 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 702295 reads mapping to 195784 Unique genomic coordinates Making up 4429 groups Consisting of 1144 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000061468-chr7---134848492-134849826 l45 e 26 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 577067 reads mapping to 206234 Unique genomic coordinates Making up 4632 groups Consisting of 1318 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000121564-chr9---35030699-35031827 l43 e 27 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 589526 reads mapping to 190303 Unique genomic coordinates Making up 4265 groups Consisting of 1166 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 425541 reads mapping to 192748 Unique genomic coordinates Making up 4254 groups Consisting of 1151 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 420160 reads mapping to 188779 Unique genomic coordinates Making up 4302 groups Consisting of 1157 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 484230 reads mapping to 202166 Unique genomic coordinates Making up 4566 groups Consisting of 1260 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 380139 reads mapping to 201480 Unique genomic coordinates Making up 4475 groups Consisting of 1245 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000055026-chr18---63242012-63243432 l44 e 32 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 674134 reads mapping to 198795 Unique genomic coordinates Making up 4390 groups Consisting of 1224 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 390951 reads mapping to 197125 Unique genomic coordinates Making up 4457 groups Consisting of 1202 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000115588-chr9-+-15523577-15525734 l43 e 34 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 564871 reads mapping to 192218 Unique genomic coordinates Making up 4329 groups Consisting of 1219 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 456522 reads mapping to 205228 Unique genomic coordinates Making up 4615 groups Consisting of 1308 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000143564-chr9-+-103328407-103331336 l45 e 36 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 510497 reads mapping to 195097 Unique genomic coordinates Making up 4316 groups Consisting of 1152 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 364785 reads mapping to 187603 Unique genomic coordinates Making up 4152 groups Consisting of 1167 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000164309-chr8-+-77649636-77652338 l43 e 38 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 534856 reads mapping to 186722 Unique genomic coordinates Making up 4191 groups Consisting of 1140 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 413188 reads mapping to 200871 Unique genomic coordinates Making up 4470 groups Consisting of 1254 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 412198 reads mapping to 196666 Unique genomic coordinates Making up 4470 groups Consisting of 1211 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 488185 reads mapping to 207887 Unique genomic coordinates Making up 4587 groups Consisting of 1242 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 485710 reads mapping to 192289 Unique genomic coordinates Making up 4280 groups Consisting of 1175 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 352059 reads mapping to 198251 Unique genomic coordinates Making up 4533 groups Consisting of 1261 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 467947 reads mapping to 192741 Unique genomic coordinates Making up 4338 groups Consisting of 1204 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000013773-chr5-+-31368561-31373545 l43 e 45 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 597711 reads mapping to 202956 Unique genomic coordinates Making up 4482 groups Consisting of 1213 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 372162 reads mapping to 203886 Unique genomic coordinates Making up 4563 groups Consisting of 1307 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 329195 reads mapping to 187513 Unique genomic coordinates Making up 4266 groups Consisting of 1139 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 391604 reads mapping to 194022 Unique genomic coordinates Making up 4353 groups Consisting of 1215 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000145257-chr5---123490592-123491749 l45 e 49 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 575664 reads mapping to 200041 Unique genomic coordinates Making up 4393 groups Consisting of 1241 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 474774 reads mapping to 199203 Unique genomic coordinates Making up 4445 groups Consisting of 1250 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 360148 reads mapping to 184499 Unique genomic coordinates Making up 4111 groups Consisting of 1118 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 432962 reads mapping to 202586 Unique genomic coordinates Making up 4507 groups Consisting of 1180 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000054050-chr6-+-48626128-48626753 l43 e 53 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 619030 reads mapping to 200414 Unique genomic coordinates Making up 4549 groups Consisting of 1265 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000121227-chr9---79546556-79548854 l43 e 54 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 531452 reads mapping to 200174 Unique genomic coordinates Making up 4518 groups Consisting of 1258 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 374481 reads mapping to 192134 Unique genomic coordinates Making up 4282 groups Consisting of 1145 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 358012 reads mapping to 196261 Unique genomic coordinates Making up 4393 groups Consisting of 1223 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 374156 reads mapping to 201945 Unique genomic coordinates Making up 4538 groups Consisting of 1298 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000124183-chr2---24537996-24539058 l43 e 58 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 668968 reads mapping to 189532 Unique genomic coordinates Making up 4238 groups Consisting of 1106 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 327238 reads mapping to 187332 Unique genomic coordinates Making up 4264 groups Consisting of 1149 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000041767-chr9---90096885-90100560 l43 e 60 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 518757 reads mapping to 192762 Unique genomic coordinates Making up 4312 groups Consisting of 1220 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 396311 reads mapping to 193473 Unique genomic coordinates Making up 4396 groups Consisting of 1182 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 465411 reads mapping to 203219 Unique genomic coordinates Making up 4552 groups Consisting of 1285 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 348041 reads mapping to 192474 Unique genomic coordinates Making up 4329 groups Consisting of 1204 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 399050 reads mapping to 202166 Unique genomic coordinates Making up 4585 groups Consisting of 1296 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000115264-chrX-+-33599043-33600165 l43 e 65 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 508468 reads mapping to 191062 Unique genomic coordinates Making up 4289 groups Consisting of 1164 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 300088 reads mapping to 173302 Unique genomic coordinates Making up 3795 groups Consisting of 1056 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 415820 reads mapping to 194295 Unique genomic coordinates Making up 4322 groups Consisting of 1212 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 426127 reads mapping to 206386 Unique genomic coordinates Making up 4588 groups Consisting of 1252 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 451035 reads mapping to 192107 Unique genomic coordinates Making up 4259 groups Consisting of 1160 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000120850-chrX---53408705-53409570 l43 e 70 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 505251 reads mapping to 189056 Unique genomic coordinates Making up 4191 groups Consisting of 1118 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 365588 reads mapping to 191539 Unique genomic coordinates Making up 4320 groups Consisting of 1157 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 432610 reads mapping to 202655 Unique genomic coordinates Making up 4553 groups Consisting of 1199 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 399026 reads mapping to 188747 Unique genomic coordinates Making up 4231 groups Consisting of 1171 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 437088 reads mapping to 201086 Unique genomic coordinates Making up 4470 groups Consisting of 1183 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 454977 reads mapping to 198939 Unique genomic coordinates Making up 4477 groups Consisting of 1344 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 428907 reads mapping to 188003 Unique genomic coordinates Making up 4197 groups Consisting of 1158 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 380116 reads mapping to 195548 Unique genomic coordinates Making up 4432 groups Consisting of 1227 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 456308 reads mapping to 206357 Unique genomic coordinates Making up 4619 groups Consisting of 1253 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 455759 reads mapping to 194154 Unique genomic coordinates Making up 4322 groups Consisting of 1209 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 356906 reads mapping to 196438 Unique genomic coordinates Making up 4456 groups Consisting of 1229 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 422155 reads mapping to 187921 Unique genomic coordinates Making up 4233 groups Consisting of 1173 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 361153 reads mapping to 198356 Unique genomic coordinates Making up 4384 groups Consisting of 1210 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 394818 reads mapping to 205351 Unique genomic coordinates Making up 4686 groups Consisting of 1253 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000085591-chr5-+-148085456-148089584 l45 e 84 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 580658 reads mapping to 188192 Unique genomic coordinates Making up 4228 groups Consisting of 1137 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000038738-chr8---48794698-48799285 l43 e 85 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 536961 reads mapping to 199914 Unique genomic coordinates Making up 4549 groups Consisting of 1196 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000160272-chr8-+-130133832-130136186 l45 e 86 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 520856 reads mapping to 195900 Unique genomic coordinates Making up 4415 groups Consisting of 1260 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000032159-chr6---102286792-102287887 l45 e 87 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 590257 reads mapping to 202264 Unique genomic coordinates Making up 4553 groups Consisting of 1263 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 486187 reads mapping to 194646 Unique genomic coordinates Making up 4333 groups Consisting of 1195 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 355686 reads mapping to 186424 Unique genomic coordinates Making up 4174 groups Consisting of 1140 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 439019 reads mapping to 189533 Unique genomic coordinates Making up 4265 groups Consisting of 1136 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000058716-chr5-+-139705207-139707691 l45 e 91 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 568706 reads mapping to 207060 Unique genomic coordinates Making up 4640 groups Consisting of 1272 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000094665-chr2---120100470-120101692 l45 e 92 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 897614 reads mapping to 198530 Unique genomic coordinates Making up 4390 groups Consisting of 1281 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 386682 reads mapping to 198793 Unique genomic coordinates Making up 4450 groups Consisting of 1258 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 492712 reads mapping to 210566 Unique genomic coordinates Making up 4609 groups Consisting of 1285 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 391317 reads mapping to 191363 Unique genomic coordinates Making up 4332 groups Consisting of 1191 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 465206 reads mapping to 209139 Unique genomic coordinates Making up 4666 groups Consisting of 1284 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 375162 reads mapping to 195447 Unique genomic coordinates Making up 4357 groups Consisting of 1192 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 472095 reads mapping to 198967 Unique genomic coordinates Making up 4433 groups Consisting of 1226 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 451629 reads mapping to 197183 Unique genomic coordinates Making up 4370 groups Consisting of 1214 clusters