Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 355908 reads mapping to 139986 Unique genomic coordinates Making up 2888 groups Consisting of 768 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 303641 reads mapping to 142329 Unique genomic coordinates Making up 2907 groups Consisting of 801 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 303940 reads mapping to 159687 Unique genomic coordinates Making up 3313 groups Consisting of 916 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 273417 reads mapping to 144721 Unique genomic coordinates Making up 3016 groups Consisting of 815 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 327750 reads mapping to 155003 Unique genomic coordinates Making up 3172 groups Consisting of 880 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 352118 reads mapping to 155488 Unique genomic coordinates Making up 3198 groups Consisting of 852 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000037275-chr9---37149521-37150706 l43 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 516236 reads mapping to 146996 Unique genomic coordinates Making up 3061 groups Consisting of 833 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 405970 reads mapping to 151011 Unique genomic coordinates Making up 3137 groups Consisting of 866 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 304077 reads mapping to 145139 Unique genomic coordinates Making up 2993 groups Consisting of 761 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 273582 reads mapping to 141558 Unique genomic coordinates Making up 2919 groups Consisting of 807 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 374447 reads mapping to 146481 Unique genomic coordinates Making up 2980 groups Consisting of 810 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 287621 reads mapping to 142235 Unique genomic coordinates Making up 2973 groups Consisting of 782 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 314348 reads mapping to 152655 Unique genomic coordinates Making up 3168 groups Consisting of 841 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000002360-chr17---33910695-33913013 l44 e 13 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 659614 reads mapping to 153443 Unique genomic coordinates Making up 3109 groups Consisting of 888 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 295671 reads mapping to 153953 Unique genomic coordinates Making up 3083 groups Consisting of 850 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 293536 reads mapping to 151429 Unique genomic coordinates Making up 3213 groups Consisting of 818 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 301478 reads mapping to 146874 Unique genomic coordinates Making up 3079 groups Consisting of 867 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 309907 reads mapping to 155898 Unique genomic coordinates Making up 3197 groups Consisting of 907 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 448476 reads mapping to 150000 Unique genomic coordinates Making up 3179 groups Consisting of 860 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 347722 reads mapping to 159420 Unique genomic coordinates Making up 3300 groups Consisting of 890 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 242235 reads mapping to 142970 Unique genomic coordinates Making up 2999 groups Consisting of 848 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 254681 reads mapping to 140588 Unique genomic coordinates Making up 2896 groups Consisting of 788 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 304384 reads mapping to 148852 Unique genomic coordinates Making up 3062 groups Consisting of 844 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 340590 reads mapping to 149580 Unique genomic coordinates Making up 3120 groups Consisting of 830 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 285635 reads mapping to 153250 Unique genomic coordinates Making up 3257 groups Consisting of 917 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000073149-chr8-+-107876823-107878125 l45 e 25 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 531949 reads mapping to 148576 Unique genomic coordinates Making up 3102 groups Consisting of 803 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 439184 reads mapping to 156521 Unique genomic coordinates Making up 3297 groups Consisting of 924 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 444370 reads mapping to 144291 Unique genomic coordinates Making up 2973 groups Consisting of 813 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 312689 reads mapping to 145875 Unique genomic coordinates Making up 2942 groups Consisting of 777 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 312611 reads mapping to 142249 Unique genomic coordinates Making up 2944 groups Consisting of 783 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 367451 reads mapping to 152794 Unique genomic coordinates Making up 3150 groups Consisting of 876 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 281418 reads mapping to 153298 Unique genomic coordinates Making up 3138 groups Consisting of 865 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000118178-chr8---19472893-19474732 l43 e 32 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 524975 reads mapping to 151177 Unique genomic coordinates Making up 3113 groups Consisting of 866 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 288754 reads mapping to 149205 Unique genomic coordinates Making up 3091 groups Consisting of 846 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 421789 reads mapping to 145738 Unique genomic coordinates Making up 3035 groups Consisting of 833 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 337181 reads mapping to 156365 Unique genomic coordinates Making up 3285 groups Consisting of 901 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 384169 reads mapping to 147884 Unique genomic coordinates Making up 3071 groups Consisting of 793 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 273127 reads mapping to 142139 Unique genomic coordinates Making up 2955 groups Consisting of 799 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 404726 reads mapping to 141141 Unique genomic coordinates Making up 2938 groups Consisting of 817 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 313656 reads mapping to 152131 Unique genomic coordinates Making up 3115 groups Consisting of 892 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 307675 reads mapping to 149019 Unique genomic coordinates Making up 3112 groups Consisting of 851 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 363005 reads mapping to 157392 Unique genomic coordinates Making up 3222 groups Consisting of 890 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 365163 reads mapping to 145623 Unique genomic coordinates Making up 3056 groups Consisting of 809 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 261339 reads mapping to 149977 Unique genomic coordinates Making up 3208 groups Consisting of 889 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 356282 reads mapping to 145986 Unique genomic coordinates Making up 3009 groups Consisting of 822 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 455634 reads mapping to 154439 Unique genomic coordinates Making up 3145 groups Consisting of 841 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 275697 reads mapping to 154094 Unique genomic coordinates Making up 3199 groups Consisting of 898 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 241395 reads mapping to 141689 Unique genomic coordinates Making up 3004 groups Consisting of 781 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 291615 reads mapping to 146887 Unique genomic coordinates Making up 3030 groups Consisting of 831 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 435237 reads mapping to 152097 Unique genomic coordinates Making up 3121 groups Consisting of 880 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 356224 reads mapping to 150679 Unique genomic coordinates Making up 3136 groups Consisting of 864 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 270536 reads mapping to 139891 Unique genomic coordinates Making up 2923 groups Consisting of 796 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 324128 reads mapping to 153321 Unique genomic coordinates Making up 3186 groups Consisting of 815 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 469899 reads mapping to 152118 Unique genomic coordinates Making up 3217 groups Consisting of 884 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 394856 reads mapping to 151336 Unique genomic coordinates Making up 3184 groups Consisting of 852 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 276093 reads mapping to 145650 Unique genomic coordinates Making up 3026 groups Consisting of 799 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 264251 reads mapping to 148512 Unique genomic coordinates Making up 3115 groups Consisting of 853 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 277898 reads mapping to 152847 Unique genomic coordinates Making up 3214 groups Consisting of 898 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000074570-chr8-+-97459760-97463058 l43 e 58 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 519076 reads mapping to 143693 Unique genomic coordinates Making up 2998 groups Consisting of 759 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 239539 reads mapping to 141834 Unique genomic coordinates Making up 3015 groups Consisting of 798 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 394661 reads mapping to 146429 Unique genomic coordinates Making up 3043 groups Consisting of 836 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 298730 reads mapping to 146600 Unique genomic coordinates Making up 3126 groups Consisting of 832 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 351257 reads mapping to 154319 Unique genomic coordinates Making up 3207 groups Consisting of 905 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 255101 reads mapping to 145726 Unique genomic coordinates Making up 3061 groups Consisting of 829 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 296474 reads mapping to 152931 Unique genomic coordinates Making up 3227 groups Consisting of 852 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 385582 reads mapping to 144674 Unique genomic coordinates Making up 2988 groups Consisting of 780 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 220767 reads mapping to 131371 Unique genomic coordinates Making up 2702 groups Consisting of 724 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 310888 reads mapping to 147320 Unique genomic coordinates Making up 3048 groups Consisting of 832 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 312740 reads mapping to 156441 Unique genomic coordinates Making up 3238 groups Consisting of 849 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 340479 reads mapping to 145746 Unique genomic coordinates Making up 3045 groups Consisting of 816 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 381653 reads mapping to 143679 Unique genomic coordinates Making up 2965 groups Consisting of 776 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 269992 reads mapping to 144969 Unique genomic coordinates Making up 2999 groups Consisting of 779 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 320444 reads mapping to 153711 Unique genomic coordinates Making up 3216 groups Consisting of 852 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 303587 reads mapping to 142818 Unique genomic coordinates Making up 2971 groups Consisting of 798 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 321485 reads mapping to 153198 Unique genomic coordinates Making up 3151 groups Consisting of 806 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 335675 reads mapping to 151124 Unique genomic coordinates Making up 3146 groups Consisting of 911 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 322563 reads mapping to 142281 Unique genomic coordinates Making up 2957 groups Consisting of 798 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 284696 reads mapping to 148366 Unique genomic coordinates Making up 3153 groups Consisting of 871 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 344623 reads mapping to 156173 Unique genomic coordinates Making up 3242 groups Consisting of 875 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 333327 reads mapping to 147205 Unique genomic coordinates Making up 3009 groups Consisting of 829 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 263501 reads mapping to 148390 Unique genomic coordinates Making up 3125 groups Consisting of 844 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 322996 reads mapping to 142562 Unique genomic coordinates Making up 2932 groups Consisting of 806 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 268179 reads mapping to 150339 Unique genomic coordinates Making up 3085 groups Consisting of 829 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 289006 reads mapping to 155327 Unique genomic coordinates Making up 3257 groups Consisting of 884 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 440521 reads mapping to 142516 Unique genomic coordinates Making up 2973 groups Consisting of 797 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 402479 reads mapping to 151194 Unique genomic coordinates Making up 3136 groups Consisting of 827 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 396662 reads mapping to 148080 Unique genomic coordinates Making up 3059 groups Consisting of 845 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 463015 reads mapping to 153424 Unique genomic coordinates Making up 3219 groups Consisting of 885 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 368018 reads mapping to 147599 Unique genomic coordinates Making up 3082 groups Consisting of 860 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 263851 reads mapping to 141101 Unique genomic coordinates Making up 2952 groups Consisting of 788 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 335164 reads mapping to 143714 Unique genomic coordinates Making up 3006 groups Consisting of 781 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 432768 reads mapping to 157168 Unique genomic coordinates Making up 3257 groups Consisting of 912 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000094665-chr2---120100470-120101692 l45 e 92 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 695266 reads mapping to 150958 Unique genomic coordinates Making up 3100 groups Consisting of 906 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 285329 reads mapping to 150495 Unique genomic coordinates Making up 3077 groups Consisting of 862 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 375192 reads mapping to 160008 Unique genomic coordinates Making up 3272 groups Consisting of 905 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 285938 reads mapping to 145126 Unique genomic coordinates Making up 3075 groups Consisting of 840 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 343346 reads mapping to 158479 Unique genomic coordinates Making up 3255 groups Consisting of 863 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 274544 reads mapping to 148021 Unique genomic coordinates Making up 3082 groups Consisting of 849 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 350359 reads mapping to 151347 Unique genomic coordinates Making up 3136 groups Consisting of 839 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 339618 reads mapping to 149542 Unique genomic coordinates Making up 3063 groups Consisting of 828 clusters