Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161910 l18 e 0 nr 1000000 chr ENSMUST00000129540 l18 e 0 nr 1500000 chr ENSMUST00000103500 l18 e 0 nr 2000000 chr ENSMUST00000131280 l18 e 0 nr 2500000 chr ENSMUST00000005400 l18 e 0 nr 3000000 chr ENSMUST00000164720 l18 e 0 nr 3500000 chr ENSMUST00000133490 l18 e 0 nr 4000000 chr ENSMUST00000168870 l18 e 0 nr 4500000 chr ENSMUST00000136230 l18 e 0 nr 5000000 chr ENSMUST00000168990 l18 e 0 nr 5500000 chr ENSMUST00000144190 l18 e 0 nr 6000000 chr ENSMUST00000121650 l18 e 0 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1551192 reads mapping to 529768 Unique genomic coordinates Making up 13847 groups Consisting of 5095 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000144231 l18 e 1 nr 1000000 chr ENSMUST00000126341 l18 e 1 nr 1500000 chr ENSMUST00000110601 l18 e 1 nr 2000000 chr ENSMUST00000147531 l18 e 1 nr 2500000 chr ENSMUST00000164351 l18 e 1 nr 3000000 chr ENSMUST00000140581 l18 e 1 nr 3500000 chr ENSMUST00000117091 l18 e 1 nr 4000000 chr ENSMUST00000100731 l18 e 1 nr 4500000 chr ENSMUST00000138441 l18 e 1 nr 5000000 chr ENSMUST00000117281 l18 e 1 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1206659 reads mapping to 517964 Unique genomic coordinates Making up 13473 groups Consisting of 4917 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000113452 l18 e 2 nr 1000000 chr ENSMUST00000142542 l18 e 2 nr 1500000 chr ENSMUST00000146582 l18 e 2 nr 2000000 chr ENSMUST00000166512 l18 e 2 nr 2500000 chr ENSMUST00000133082 l18 e 2 nr 3000000 chr ENSMUST00000134742 l18 e 2 nr 3500000 chr ENSMUST00000162642 l18 e 2 nr 4000000 chr ENSMUST00000130632 l18 e 2 nr 4500000 chr ENSMUST00000171522 l18 e 2 nr 5000000 chr ENSMUST00000035742 l18 e 2 nr 5500000 chr ENSMUST00000149082 l18 e 2 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1377122 reads mapping to 555091 Unique genomic coordinates Making up 14282 groups Consisting of 5353 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161583 l18 e 3 nr 1000000 chr ENSMUST00000126833 l18 e 3 nr 1500000 chr ENSMUST00000145823 l18 e 3 nr 2000000 chr ENSMUST00000160113 l18 e 3 nr 2500000 chr ENSMUST00000152383 l18 e 3 nr 3000000 chr ENSMUST00000173823 l18 e 3 nr 3500000 chr ENSMUST00000131503 l18 e 3 nr 4000000 chr ENSMUST00000169413 l18 e 3 nr 4500000 chr ENSMUST00000146953 l18 e 3 nr 5000000 chr ENSMUST00000139753 l18 e 3 nr 5500000 chr ENSMUST00000152593 l18 e 3 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1450633 reads mapping to 532300 Unique genomic coordinates Making up 13766 groups Consisting of 5058 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000136944 l18 e 4 nr 1000000 chr ENSMUST00000133194 l18 e 4 nr 1500000 chr ENSMUST00000038304 l18 e 4 nr 2000000 chr ENSMUST00000145224 l18 e 4 nr 2500000 chr ENSMUST00000147274 l18 e 4 nr 3000000 chr ENSMUST00000164694 l18 e 4 nr 3500000 chr ENSMUST00000124114 l18 e 4 nr 4000000 chr ENSMUST00000165344 l18 e 4 nr 4500000 chr ENSMUST00000122834 l18 e 4 nr 5000000 chr ENSMUST00000150644 l18 e 4 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1247563 reads mapping to 508356 Unique genomic coordinates Making up 13181 groups Consisting of 4790 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000135005 l18 e 5 nr 1000000 chr ENSMUST00000142465 l18 e 5 nr 1500000 chr ENSMUST00000171985 l18 e 5 nr 2000000 chr ENSMUST00000128285 l18 e 5 nr 2500000 chr ENSMUST00000149635 l18 e 5 nr 3000000 chr ENSMUST00000132595 l18 e 5 nr 3500000 chr ENSMUST00000129285 l18 e 5 nr 4000000 chr ENSMUST00000142665 l18 e 5 nr 4500000 chr ENSMUST00000152835 l18 e 5 nr 5000000 chr ENSMUST00000141565 l18 e 5 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1191224 reads mapping to 536890 Unique genomic coordinates Making up 13912 groups Consisting of 5093 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000147556 l18 e 6 nr 1000000 chr ENSMUST00000100556 l18 e 6 nr 1500000 chr ENSMUST00000148186 l18 e 6 nr 2000000 chr ENSMUST00000160746 l18 e 6 nr 2500000 chr ENSMUST00000164606 l18 e 6 nr 3000000 chr ENSMUST00000170976 l18 e 6 nr 3500000 chr ENSMUST00000147926 l18 e 6 nr 4000000 chr ENSMUST00000144716 l18 e 6 nr 4500000 chr ENSMUST00000127146 l18 e 6 nr 5000000 chr ENSMUST00000130106 l18 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1179036 reads mapping to 521283 Unique genomic coordinates Making up 13692 groups Consisting of 5052 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000144547 l18 e 7 nr 1000000 chr ENSMUST00000132487 l18 e 7 nr 1500000 chr ENSMUST00000129117 l18 e 7 nr 2000000 chr ENSMUST00000155667 l18 e 7 nr 2500000 chr ENSMUST00000147907 l18 e 7 nr 3000000 chr ENSMUST00000141917 l18 e 7 nr 3500000 chr ENSMUST00000151927 l18 e 7 nr 4000000 chr ENSMUST00000156937 l18 e 7 nr 4500000 chr ENSMUST00000159547 l18 e 7 nr 5000000 chr ENSMUST00000158807 l18 e 7 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1311579 reads mapping to 525458 Unique genomic coordinates Making up 13615 groups Consisting of 4960 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000143848 l18 e 8 nr 1000000 chr ENSMUST00000133038 l18 e 8 nr 1500000 chr ENSMUST00000139378 l18 e 8 nr 2000000 chr ENSMUST00000165998 l18 e 8 nr 2500000 chr ENSMUST00000150728 l18 e 8 nr 3000000 chr ENSMUST00000143658 l18 e 8 nr 3500000 chr ENSMUST00000128828 l18 e 8 nr 4000000 chr ENSMUST00000156078 l18 e 8 nr 4500000 chr ENSMUST00000140578 l18 e 8 nr 5000000 chr ENSMUST00000138298 l18 e 8 nr 5500000 chr ENSMUST00000138548 l18 e 8 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1424546 reads mapping to 535165 Unique genomic coordinates Making up 13740 groups Consisting of 5093 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000148259 l18 e 9 nr 1000000 chr ENSMUST00000138749 l18 e 9 nr 1500000 chr ENSMUST00000153819 l18 e 9 nr 2000000 chr ENSMUST00000131729 l18 e 9 nr 2500000 chr ENSMUST00000160349 l18 e 9 nr 3000000 chr ENSMUST00000117219 l18 e 9 nr 3500000 chr ENSMUST00000148769 l18 e 9 nr 4000000 chr ENSMUST00000144039 l18 e 9 nr 4500000 chr ENSMUST00000111729 l18 e 9 nr 5000000 chr ENSMUST00000146709 l18 e 9 nr 5500000 chr ENSMUST00000121279 l18 e 9 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1392391 reads mapping to 533981 Unique genomic coordinates Making up 13897 groups Consisting of 5068 clusters