Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000020000 l18 e 0 nr 1000000 chr ENSMUST00000151440 l18 e 0 nr 1500000 chr ENSMUST00000110130 l18 e 0 nr 2000000 chr ENSMUST00000131280 l18 e 0 nr 2500000 chr ENSMUST00000054230 l18 e 0 nr 3000000 chr ENSMUST00000165830 l18 e 0 nr 3500000 chr ENSMUST00000097660 l18 e 0 nr 4000000 chr ENSMUST00000113830 l18 e 0 nr 4500000 chr ENSMUST00000029400 l18 e 0 nr 5000000 chr ENSMUST00000030480 l18 e 0 nr 5500000 chr ENSMUST00000146200 l18 e 0 nr 6000000 chr ENSMUST00000097980 l18 e 0 nr 6500000 chr ENSMUST00000071750 l18 e 0 nr 7000000 chr ENSMUST00000033570 l18 e 0 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1044348 reads mapping to 314639 Unique genomic coordinates Making up 9013 groups Consisting of 2325 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000043881 l18 e 1 nr 1000000 chr ENSMUST00000102611 l18 e 1 nr 1500000 chr ENSMUST00000110321 l18 e 1 nr 2000000 chr ENSMUST00000170521 l18 e 1 nr 2500000 chr ENSMUST00000023741 l18 e 1 nr 3000000 chr ENSMUST00000023741 l18 e 1 nr 3500000 chr ENSMUST00000171691 l18 e 1 nr 4000000 chr ENSMUST00000073581 l18 e 1 nr 4500000 chr ENSMUST00000090851 l18 e 1 nr 5000000 chr ENSMUST00000094421 l18 e 1 nr 5500000 chr ENSMUST00000155551 l18 e 1 nr 6000000 chr ENSMUST00000030691 l18 e 1 nr 6500000 chr ENSMUST00000117171 l18 e 1 nr 7000000 chr ENSMUST00000094971 l18 e 1 nr 7500000 chr ENSMUST00000115481 l18 e 1 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 597018 reads mapping to 309977 Unique genomic coordinates Making up 8952 groups Consisting of 2201 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000166172 l18 e 2 nr 1000000 chr ENSMUST00000118112 l18 e 2 nr 1500000 chr ENSMUST00000142472 l18 e 2 nr 2000000 chr ENSMUST00000110082 l18 e 2 nr 2500000 chr ENSMUST00000112792 l18 e 2 nr 3000000 chr ENSMUST00000022952 l18 e 2 nr 3500000 chr ENSMUST00000003762 l18 e 2 nr 4000000 chr ENSMUST00000025632 l18 e 2 nr 4500000 chr ENSMUST00000090852 l18 e 2 nr 5000000 chr ENSMUST00000134982 l18 e 2 nr 5500000 chr ENSMUST00000094192 l18 e 2 nr 6000000 chr ENSMUST00000088392 l18 e 2 nr 6500000 chr ENSMUST00000074662 l18 e 2 nr 7000000 chr ENSMUST00000098032 l18 e 2 nr 7500000 chr ENSMUST00000168532 l18 e 2 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 768801 reads mapping to 299214 Unique genomic coordinates Making up 8637 groups Consisting of 2222 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000097713 l18 e 3 nr 1000000 chr ENSMUST00000117513 l18 e 3 nr 1500000 chr ENSMUST00000018653 l18 e 3 nr 2000000 chr ENSMUST00000110133 l18 e 3 nr 2500000 chr ENSMUST00000167953 l18 e 3 nr 3000000 chr ENSMUST00000119943 l18 e 3 nr 3500000 chr ENSMUST00000053183 l18 e 3 nr 4000000 chr ENSMUST00000168533 l18 e 3 nr 4500000 chr ENSMUST00000027973 l18 e 3 nr 5000000 chr ENSMUST00000109443 l18 e 3 nr 5500000 chr ENSMUST00000071723 l18 e 3 nr 6000000 chr ENSMUST00000031273 l18 e 3 nr 6500000 chr ENSMUST00000172463 l18 e 3 nr 7000000 chr ENSMUST00000026693 l18 e 3 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 873523 reads mapping to 306652 Unique genomic coordinates Making up 8855 groups Consisting of 2187 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000000834 l18 e 4 nr 1000000 chr ENSMUST00000169494 l18 e 4 nr 1500000 chr ENSMUST00000153204 l18 e 4 nr 2000000 chr ENSMUST00000021734 l18 e 4 nr 2500000 chr ENSMUST00000112794 l18 e 4 nr 3000000 chr ENSMUST00000049484 l18 e 4 nr 3500000 chr ENSMUST00000038794 l18 e 4 nr 4000000 chr ENSMUST00000028294 l18 e 4 nr 4500000 chr ENSMUST00000089634 l18 e 4 nr 5000000 chr ENSMUST00000107074 l18 e 4 nr 5500000 chr ENSMUST00000105784 l18 e 4 nr 6000000 chr ENSMUST00000149714 l18 e 4 nr 6500000 chr ENSMUST00000108364 l18 e 4 nr 7000000 chr ENSMUST00000093534 l18 e 4 nr 7500000 chr ENSMUST00000060744 l18 e 4 nr 8000000 chr ENSMUST00000039374 l18 e 4 nr 8500000 chr ENSMUST00000142624 l18 e 4 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1345403 reads mapping to 322088 Unique genomic coordinates Making up 9307 groups Consisting of 2358 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000110855 l18 e 5 nr 1000000 chr ENSMUST00000169325 l18 e 5 nr 1500000 chr ENSMUST00000132685 l18 e 5 nr 2000000 chr ENSMUST00000095585 l18 e 5 nr 2500000 chr ENSMUST00000112795 l18 e 5 nr 3000000 chr ENSMUST00000054555 l18 e 5 nr 3500000 chr ENSMUST00000015725 l18 e 5 nr 4000000 chr ENSMUST00000163265 l18 e 5 nr 4500000 chr ENSMUST00000000895 l18 e 5 nr 5000000 chr ENSMUST00000125645 l18 e 5 nr 5500000 chr ENSMUST00000031425 l18 e 5 nr 6000000 chr ENSMUST00000058745 l18 e 5 nr 6500000 chr ENSMUST00000115315 l18 e 5 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 890494 reads mapping to 312391 Unique genomic coordinates Making up 9053 groups Consisting of 2247 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000040706 l18 e 6 nr 1000000 chr ENSMUST00000093046 l18 e 6 nr 1500000 chr ENSMUST00000021546 l18 e 6 nr 2000000 chr ENSMUST00000112816 l18 e 6 nr 2500000 chr ENSMUST00000057486 l18 e 6 nr 3000000 chr ENSMUST00000023336 l18 e 6 nr 3500000 chr ENSMUST00000159346 l18 e 6 nr 4000000 chr ENSMUST00000132186 l18 e 6 nr 4500000 chr ENSMUST00000068316 l18 e 6 nr 5000000 chr ENSMUST00000151346 l18 e 6 nr 5500000 chr ENSMUST00000113726 l18 e 6 nr 6000000 chr ENSMUST00000169266 l18 e 6 nr 6500000 chr ENSMUST00000003386 l18 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 678879 reads mapping to 313311 Unique genomic coordinates Making up 9004 groups Consisting of 2246 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000027817 l18 e 7 nr 1000000 chr ENSMUST00000164077 l18 e 7 nr 1500000 chr ENSMUST00000103147 l18 e 7 nr 2000000 chr ENSMUST00000099427 l18 e 7 nr 2500000 chr ENSMUST00000166957 l18 e 7 nr 3000000 chr ENSMUST00000073337 l18 e 7 nr 3500000 chr ENSMUST00000167027 l18 e 7 nr 4000000 chr ENSMUST00000110067 l18 e 7 nr 4500000 chr ENSMUST00000163267 l18 e 7 nr 5000000 chr ENSMUST00000047677 l18 e 7 nr 5500000 chr ENSMUST00000088987 l18 e 7 nr 6000000 chr ENSMUST00000078257 l18 e 7 nr 6500000 chr ENSMUST00000169307 l18 e 7 nr 7000000 chr ENSMUST00000026607 l18 e 7 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1063336 reads mapping to 310380 Unique genomic coordinates Making up 9040 groups Consisting of 2172 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000045108 l18 e 8 nr 1000000 chr ENSMUST00000109198 l18 e 8 nr 1500000 chr ENSMUST00000133558 l18 e 8 nr 2000000 chr ENSMUST00000169218 l18 e 8 nr 2500000 chr ENSMUST00000022358 l18 e 8 nr 3000000 chr ENSMUST00000089618 l18 e 8 nr 3500000 chr ENSMUST00000099998 l18 e 8 nr 4000000 chr ENSMUST00000110648 l18 e 8 nr 4500000 chr ENSMUST00000079978 l18 e 8 nr 5000000 chr ENSMUST00000155908 l18 e 8 nr 5500000 chr ENSMUST00000102858 l18 e 8 nr 6000000 chr ENSMUST00000171788 l18 e 8 nr 6500000 chr ENSMUST00000055918 l18 e 8 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 620630 reads mapping to 309477 Unique genomic coordinates Making up 8867 groups Consisting of 2140 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000078259 l18 e 9 nr 1000000 chr ENSMUST00000094179 l18 e 9 nr 1500000 chr ENSMUST00000057859 l18 e 9 nr 2000000 chr ENSMUST00000164459 l18 e 9 nr 2500000 chr ENSMUST00000161649 l18 e 9 nr 3000000 chr ENSMUST00000113829 l18 e 9 nr 3500000 chr ENSMUST00000096249 l18 e 9 nr 4000000 chr ENSMUST00000040149 l18 e 9 nr 4500000 chr ENSMUST00000044459 l18 e 9 nr 5000000 chr ENSMUST00000162349 l18 e 9 nr 5500000 chr ENSMUST00000032359 l18 e 9 nr 6000000 chr ENSMUST00000078879 l18 e 9 nr 6500000 chr ENSMUST00000113419 l18 e 9 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 566092 reads mapping to 303253 Unique genomic coordinates Making up 8821 groups Consisting of 2238 clusters