Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000129950 l18 e 0 nr 1000000 chr ENSMUST00000154220 l18 e 0 nr 1500000 chr ENSMUST00000123050 l18 e 0 nr 2000000 chr ENSMUST00000156420 l18 e 0 nr 2500000 chr ENSMUST00000174250 l18 e 0 nr 3000000 chr ENSMUST00000134480 l18 e 0 nr 3500000 chr ENSMUST00000140480 l18 e 0 nr 4000000 chr ENSMUST00000129930 l18 e 0 nr 4500000 chr ENSMUST00000143980 l18 e 0 nr 5000000 chr ENSMUST00000132630 l18 e 0 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1194887 reads mapping to 587693 Unique genomic coordinates Making up 13914 groups Consisting of 6162 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000131361 l18 e 1 nr 1000000 chr ENSMUST00000129801 l18 e 1 nr 1500000 chr ENSMUST00000124701 l18 e 1 nr 2000000 chr ENSMUST00000150211 l18 e 1 nr 2500000 chr ENSMUST00000159211 l18 e 1 nr 3000000 chr ENSMUST00000148231 l18 e 1 nr 3500000 chr ENSMUST00000172221 l18 e 1 nr 4000000 chr ENSMUST00000127081 l18 e 1 nr 4500000 chr ENSMUST00000128951 l18 e 1 nr 5000000 chr ENSMUST00000161411 l18 e 1 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1203637 reads mapping to 586788 Unique genomic coordinates Making up 13564 groups Consisting of 6141 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165982 l18 e 2 nr 1000000 chr ENSMUST00000151982 l18 e 2 nr 1500000 chr ENSMUST00000137052 l18 e 2 nr 2000000 chr ENSMUST00000125902 l18 e 2 nr 2500000 chr ENSMUST00000150792 l18 e 2 nr 3000000 chr ENSMUST00000099292 l18 e 2 nr 3500000 chr ENSMUST00000164742 l18 e 2 nr 4000000 chr ENSMUST00000132842 l18 e 2 nr 4500000 chr ENSMUST00000132932 l18 e 2 nr 5000000 chr ENSMUST00000118932 l18 e 2 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1224462 reads mapping to 620001 Unique genomic coordinates Making up 14261 groups Consisting of 6555 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000153113 l18 e 3 nr 1000000 chr ENSMUST00000143163 l18 e 3 nr 1500000 chr ENSMUST00000166323 l18 e 3 nr 2000000 chr ENSMUST00000144233 l18 e 3 nr 2500000 chr ENSMUST00000129953 l18 e 3 nr 3000000 chr ENSMUST00000126753 l18 e 3 nr 3500000 chr ENSMUST00000107643 l18 e 3 nr 4000000 chr ENSMUST00000134473 l18 e 3 nr 4500000 chr ENSMUST00000154403 l18 e 3 nr 5000000 chr ENSMUST00000117523 l18 e 3 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1284088 reads mapping to 595696 Unique genomic coordinates Making up 13995 groups Consisting of 6269 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000142974 l18 e 4 nr 1000000 chr ENSMUST00000144494 l18 e 4 nr 1500000 chr ENSMUST00000170984 l18 e 4 nr 2000000 chr ENSMUST00000137044 l18 e 4 nr 2500000 chr ENSMUST00000154984 l18 e 4 nr 3000000 chr ENSMUST00000149844 l18 e 4 nr 3500000 chr ENSMUST00000134854 l18 e 4 nr 4000000 chr ENSMUST00000161134 l18 e 4 nr 4500000 chr ENSMUST00000145344 l18 e 4 nr 5000000 chr ENSMUST00000156634 l18 e 4 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1347551 reads mapping to 568448 Unique genomic coordinates Making up 13324 groups Consisting of 6025 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000168505 l18 e 5 nr 1000000 chr ENSMUST00000172615 l18 e 5 nr 1500000 chr ENSMUST00000171465 l18 e 5 nr 2000000 chr ENSMUST00000127225 l18 e 5 nr 2500000 chr ENSMUST00000134545 l18 e 5 nr 3000000 chr ENSMUST00000152645 l18 e 5 nr 3500000 chr ENSMUST00000153705 l18 e 5 nr 4000000 chr ENSMUST00000147765 l18 e 5 nr 4500000 chr ENSMUST00000171805 l18 e 5 nr 5000000 chr ENSMUST00000161105 l18 e 5 nr 5500000 chr ENSMUST00000156535 l18 e 5 nr 6000000 chr ENSMUST00000122015 l18 e 5 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1320565 reads mapping to 603939 Unique genomic coordinates Making up 14028 groups Consisting of 6305 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000097166 l18 e 6 nr 1000000 chr ENSMUST00000126876 l18 e 6 nr 1500000 chr ENSMUST00000126556 l18 e 6 nr 2000000 chr ENSMUST00000141266 l18 e 6 nr 2500000 chr ENSMUST00000154986 l18 e 6 nr 3000000 chr ENSMUST00000129276 l18 e 6 nr 3500000 chr ENSMUST00000128696 l18 e 6 nr 4000000 chr ENSMUST00000123226 l18 e 6 nr 4500000 chr ENSMUST00000155466 l18 e 6 nr 5000000 chr ENSMUST00000168516 l18 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1481669 reads mapping to 588656 Unique genomic coordinates Making up 13808 groups Consisting of 6280 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000137177 l18 e 7 nr 1000000 chr ENSMUST00000130797 l18 e 7 nr 1500000 chr ENSMUST00000162137 l18 e 7 nr 2000000 chr ENSMUST00000161517 l18 e 7 nr 2500000 chr ENSMUST00000121757 l18 e 7 nr 3000000 chr ENSMUST00000146797 l18 e 7 nr 3500000 chr ENSMUST00000128507 l18 e 7 nr 4000000 chr ENSMUST00000159827 l18 e 7 nr 4500000 chr ENSMUST00000145867 l18 e 7 nr 5000000 chr ENSMUST00000145867 l18 e 7 nr 5500000 chr ENSMUST00000126887 l18 e 7 nr 6000000 chr ENSMUST00000135807 l18 e 7 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1251505 reads mapping to 593224 Unique genomic coordinates Making up 13822 groups Consisting of 6254 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000123458 l18 e 8 nr 1000000 chr ENSMUST00000131468 l18 e 8 nr 1500000 chr ENSMUST00000147508 l18 e 8 nr 2000000 chr ENSMUST00000136698 l18 e 8 nr 2500000 chr ENSMUST00000159478 l18 e 8 nr 3000000 chr ENSMUST00000169968 l18 e 8 nr 3500000 chr ENSMUST00000145228 l18 e 8 nr 4000000 chr ENSMUST00000149878 l18 e 8 nr 4500000 chr ENSMUST00000160408 l18 e 8 nr 5000000 chr ENSMUST00000155078 l18 e 8 nr 5500000 chr ENSMUST00000151938 l18 e 8 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1297262 reads mapping to 598818 Unique genomic coordinates Making up 13891 groups Consisting of 6225 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000171489 l18 e 9 nr 1000000 chr ENSMUST00000119399 l18 e 9 nr 1500000 chr ENSMUST00000128879 l18 e 9 nr 2000000 chr ENSMUST00000160679 l18 e 9 nr 2500000 chr ENSMUST00000130549 l18 e 9 nr 3000000 chr ENSMUST00000129289 l18 e 9 nr 3500000 chr ENSMUST00000150959 l18 e 9 nr 4000000 chr ENSMUST00000150949 l18 e 9 nr 4500000 chr ENSMUST00000124269 l18 e 9 nr 5000000 chr ENSMUST00000149439 l18 e 9 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 1393863 reads mapping to 602118 Unique genomic coordinates Making up 14023 groups Consisting of 6330 clusters