Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000003310 l18 e 0 nr 1000000 chr ENSMUST00000071880 l18 e 0 nr 1500000 chr ENSMUST00000095610 l18 e 0 nr 2000000 chr ENSMUST00000140840 l18 e 0 nr 2500000 chr ENSMUST00000172170 l18 e 0 nr 3000000 chr ENSMUST00000126610 l18 e 0 nr 3500000 chr ENSMUST00000119310 l18 e 0 nr 4000000 chr ENSMUST00000084250 l18 e 0 nr 4500000 chr ENSMUST00000112790 l18 e 0 nr 5000000 chr ENSMUST00000075190 l18 e 0 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5493140 reads mapping to 2578370 Unique genomic coordinates Making up 74615 groups Consisting of 21131 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000170771 l18 e 1 nr 1000000 chr ENSMUST00000047441 l18 e 1 nr 1500000 chr ENSMUST00000050021 l18 e 1 nr 2000000 chr ENSMUST00000166441 l18 e 1 nr 2500000 chr ENSMUST00000025311 l18 e 1 nr 3000000 chr ENSMUST00000099311 l18 e 1 nr 3500000 chr ENSMUST00000040821 l18 e 1 nr 4000000 chr ENSMUST00000024171 l18 e 1 nr 4500000 chr ENSMUST00000124951 l18 e 1 nr 5000000 chr ENSMUST00000096321 l18 e 1 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5035921 reads mapping to 2547620 Unique genomic coordinates Making up 73845 groups Consisting of 20730 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000019992 l18 e 2 nr 1000000 chr ENSMUST00000020732 l18 e 2 nr 1500000 chr ENSMUST00000117882 l18 e 2 nr 2000000 chr ENSMUST00000047122 l18 e 2 nr 2500000 chr ENSMUST00000025992 l18 e 2 nr 3000000 chr ENSMUST00000122912 l18 e 2 nr 3500000 chr ENSMUST00000107432 l18 e 2 nr 4000000 chr ENSMUST00000071652 l18 e 2 nr 4500000 chr ENSMUST00000019882 l18 e 2 nr 5000000 chr ENSMUST00000054052 l18 e 2 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5346624 reads mapping to 2537874 Unique genomic coordinates Making up 73166 groups Consisting of 20734 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000166423 l18 e 3 nr 1000000 chr ENSMUST00000046513 l18 e 3 nr 1500000 chr ENSMUST00000128483 l18 e 3 nr 2000000 chr ENSMUST00000068853 l18 e 3 nr 2500000 chr ENSMUST00000173433 l18 e 3 nr 3000000 chr ENSMUST00000166873 l18 e 3 nr 3500000 chr ENSMUST00000113263 l18 e 3 nr 4000000 chr ENSMUST00000124443 l18 e 3 nr 4500000 chr ENSMUST00000029623 l18 e 3 nr 5000000 chr ENSMUST00000084203 l18 e 3 nr 5500000 chr ENSMUST00000170773 l18 e 3 nr 6000000 chr ENSMUST00000107193 l18 e 3 nr 6500000 chr ENSMUST00000120493 l18 e 3 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 6909704 reads mapping to 2504492 Unique genomic coordinates Making up 72506 groups Consisting of 20474 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000099724 l18 e 4 nr 1000000 chr ENSMUST00000135884 l18 e 4 nr 1500000 chr ENSMUST00000061594 l18 e 4 nr 2000000 chr ENSMUST00000023334 l18 e 4 nr 2500000 chr ENSMUST00000026924 l18 e 4 nr 3000000 chr ENSMUST00000099084 l18 e 4 nr 3500000 chr ENSMUST00000061234 l18 e 4 nr 4000000 chr ENSMUST00000049124 l18 e 4 nr 4500000 chr ENSMUST00000040254 l18 e 4 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 4925446 reads mapping to 2586140 Unique genomic coordinates Making up 74824 groups Consisting of 21130 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000095715 l18 e 5 nr 1000000 chr ENSMUST00000100845 l18 e 5 nr 1500000 chr ENSMUST00000110145 l18 e 5 nr 2000000 chr ENSMUST00000022915 l18 e 5 nr 2500000 chr ENSMUST00000137845 l18 e 5 nr 3000000 chr ENSMUST00000066285 l18 e 5 nr 3500000 chr ENSMUST00000090815 l18 e 5 nr 4000000 chr ENSMUST00000031055 l18 e 5 nr 4500000 chr ENSMUST00000127485 l18 e 5 nr 5000000 chr ENSMUST00000117565 l18 e 5 nr 5500000 chr ENSMUST00000112405 l18 e 5 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5513584 reads mapping to 2571869 Unique genomic coordinates Making up 74256 groups Consisting of 21152 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000027906 l18 e 6 nr 1000000 chr ENSMUST00000160726 l18 e 6 nr 1500000 chr ENSMUST00000102756 l18 e 6 nr 2000000 chr ENSMUST00000100436 l18 e 6 nr 2500000 chr ENSMUST00000117386 l18 e 6 nr 3000000 chr ENSMUST00000141176 l18 e 6 nr 3500000 chr ENSMUST00000087176 l18 e 6 nr 4000000 chr ENSMUST00000026866 l18 e 6 nr 4500000 chr ENSMUST00000030806 l18 e 6 nr 5000000 chr ENSMUST00000031976 l18 e 6 nr 5500000 chr ENSMUST00000076846 l18 e 6 nr 6000000 chr ENSMUST00000015486 l18 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 6121895 reads mapping to 2594469 Unique genomic coordinates Making up 75191 groups Consisting of 21504 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000099577 l18 e 7 nr 1000000 chr ENSMUST00000154617 l18 e 7 nr 1500000 chr ENSMUST00000065537 l18 e 7 nr 2000000 chr ENSMUST00000071647 l18 e 7 nr 2500000 chr ENSMUST00000096547 l18 e 7 nr 3000000 chr ENSMUST00000103137 l18 e 7 nr 3500000 chr ENSMUST00000030457 l18 e 7 nr 4000000 chr ENSMUST00000155047 l18 e 7 nr 4500000 chr ENSMUST00000066597 l18 e 7 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 4950207 reads mapping to 2565231 Unique genomic coordinates Making up 74255 groups Consisting of 20922 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000092498 l18 e 8 nr 1000000 chr ENSMUST00000067058 l18 e 8 nr 1500000 chr ENSMUST00000161568 l18 e 8 nr 2000000 chr ENSMUST00000132438 l18 e 8 nr 2500000 chr ENSMUST00000070878 l18 e 8 nr 3000000 chr ENSMUST00000081528 l18 e 8 nr 3500000 chr ENSMUST00000102518 l18 e 8 nr 4000000 chr ENSMUST00000041558 l18 e 8 nr 4500000 chr ENSMUST00000107948 l18 e 8 nr 5000000 chr ENSMUST00000108938 l18 e 8 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5466306 reads mapping to 2501401 Unique genomic coordinates Making up 72400 groups Consisting of 20176 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000027839 l18 e 9 nr 1000000 chr ENSMUST00000075329 l18 e 9 nr 1500000 chr ENSMUST00000093219 l18 e 9 nr 2000000 chr ENSMUST00000020649 l18 e 9 nr 2500000 chr ENSMUST00000105049 l18 e 9 nr 3000000 chr ENSMUST00000124549 l18 e 9 nr 3500000 chr ENSMUST00000169719 l18 e 9 nr 4000000 chr ENSMUST00000169679 l18 e 9 nr 4500000 chr ENSMUST00000040149 l18 e 9 nr 5000000 chr ENSMUST00000045029 l18 e 9 nr 5500000 chr ENSMUST00000132179 l18 e 9 nr 6000000 chr ENSMUST00000106649 l18 e 9 nr 6500000 chr ENSMUST00000034279 l18 e 9 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 6988116 reads mapping to 2572810 Unique genomic coordinates Making up 74631 groups Consisting of 20979 clusters