Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000001240 l18 e 0 nr 1000000 chr ENSMUST00000169970 l18 e 0 nr 1500000 chr ENSMUST00000103500 l18 e 0 nr 2000000 chr ENSMUST00000100820 l18 e 0 nr 2500000 chr ENSMUST00000116400 l18 e 0 nr 3000000 chr ENSMUST00000115550 l18 e 0 nr 3500000 chr ENSMUST00000028610 l18 e 0 nr 4000000 chr ENSMUST00000108060 l18 e 0 nr 4500000 chr ENSMUST00000086200 l18 e 0 nr 5000000 chr ENSMUST00000069740 l18 e 0 nr 5500000 chr ENSMUST00000086580 l18 e 0 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5864455 reads mapping to 2343227 Unique genomic coordinates Making up 64736 groups Consisting of 17611 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000095541 l18 e 1 nr 1000000 chr ENSMUST00000108101 l18 e 1 nr 1500000 chr ENSMUST00000165351 l18 e 1 nr 2000000 chr ENSMUST00000023491 l18 e 1 nr 2500000 chr ENSMUST00000026221 l18 e 1 nr 3000000 chr ENSMUST00000057481 l18 e 1 nr 3500000 chr ENSMUST00000108051 l18 e 1 nr 4000000 chr ENSMUST00000006381 l18 e 1 nr 4500000 chr ENSMUST00000111111 l18 e 1 nr 5000000 chr ENSMUST00000171371 l18 e 1 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5488244 reads mapping to 2325788 Unique genomic coordinates Making up 64144 groups Consisting of 17625 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000013842 l18 e 2 nr 1000000 chr ENSMUST00000018632 l18 e 2 nr 1500000 chr ENSMUST00000122902 l18 e 2 nr 2000000 chr ENSMUST00000090292 l18 e 2 nr 2500000 chr ENSMUST00000097352 l18 e 2 nr 3000000 chr ENSMUST00000026072 l18 e 2 nr 3500000 chr ENSMUST00000111272 l18 e 2 nr 4000000 chr ENSMUST00000168182 l18 e 2 nr 4500000 chr ENSMUST00000119212 l18 e 2 nr 5000000 chr ENSMUST00000084852 l18 e 2 nr 5500000 chr ENSMUST00000167372 l18 e 2 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5627874 reads mapping to 2326641 Unique genomic coordinates Making up 63985 groups Consisting of 17518 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000105463 l18 e 3 nr 1000000 chr ENSMUST00000071213 l18 e 3 nr 1500000 chr ENSMUST00000169593 l18 e 3 nr 2000000 chr ENSMUST00000022923 l18 e 3 nr 2500000 chr ENSMUST00000025253 l18 e 3 nr 3000000 chr ENSMUST00000025803 l18 e 3 nr 3500000 chr ENSMUST00000099623 l18 e 3 nr 4000000 chr ENSMUST00000149453 l18 e 3 nr 4500000 chr ENSMUST00000114823 l18 e 3 nr 5000000 chr ENSMUST00000161713 l18 e 3 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5400535 reads mapping to 2269754 Unique genomic coordinates Making up 62921 groups Consisting of 17219 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000169404 l18 e 4 nr 1000000 chr ENSMUST00000056184 l18 e 4 nr 1500000 chr ENSMUST00000116404 l18 e 4 nr 2000000 chr ENSMUST00000115314 l18 e 4 nr 2500000 chr ENSMUST00000125114 l18 e 4 nr 3000000 chr ENSMUST00000104934 l18 e 4 nr 3500000 chr ENSMUST00000168644 l18 e 4 nr 4000000 chr ENSMUST00000125574 l18 e 4 nr 4500000 chr ENSMUST00000098604 l18 e 4 nr 5000000 chr ENSMUST00000082414 l18 e 4 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5135424 reads mapping to 2358371 Unique genomic coordinates Making up 64931 groups Consisting of 17954 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000168455 l18 e 5 nr 1000000 chr ENSMUST00000108705 l18 e 5 nr 1500000 chr ENSMUST00000017945 l18 e 5 nr 2000000 chr ENSMUST00000163325 l18 e 5 nr 2500000 chr ENSMUST00000170785 l18 e 5 nr 3000000 chr ENSMUST00000099525 l18 e 5 nr 3500000 chr ENSMUST00000110005 l18 e 5 nr 4000000 chr ENSMUST00000106955 l18 e 5 nr 4500000 chr ENSMUST00000032065 l18 e 5 nr 5000000 chr ENSMUST00000142395 l18 e 5 nr 5500000 chr ENSMUST00000055455 l18 e 5 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5505126 reads mapping to 2339684 Unique genomic coordinates Making up 64720 groups Consisting of 17704 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000169436 l18 e 6 nr 1000000 chr ENSMUST00000108716 l18 e 6 nr 1500000 chr ENSMUST00000103086 l18 e 6 nr 2000000 chr ENSMUST00000135166 l18 e 6 nr 2500000 chr ENSMUST00000022496 l18 e 6 nr 3000000 chr ENSMUST00000114036 l18 e 6 nr 3500000 chr ENSMUST00000166496 l18 e 6 nr 4000000 chr ENSMUST00000087876 l18 e 6 nr 4500000 chr ENSMUST00000091676 l18 e 6 nr 5000000 chr ENSMUST00000172236 l18 e 6 nr 5500000 chr ENSMUST00000081506 l18 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5917361 reads mapping to 2350680 Unique genomic coordinates Making up 64879 groups Consisting of 17602 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000056097 l18 e 7 nr 1000000 chr ENSMUST00000048207 l18 e 7 nr 1500000 chr ENSMUST00000121337 l18 e 7 nr 2000000 chr ENSMUST00000161527 l18 e 7 nr 2500000 chr ENSMUST00000080217 l18 e 7 nr 3000000 chr ENSMUST00000102517 l18 e 7 nr 3500000 chr ENSMUST00000084527 l18 e 7 nr 4000000 chr ENSMUST00000094327 l18 e 7 nr 4500000 chr ENSMUST00000004587 l18 e 7 nr 5000000 chr ENSMUST00000034527 l18 e 7 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5254588 reads mapping to 2344136 Unique genomic coordinates Making up 64595 groups Consisting of 17699 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000092498 l18 e 8 nr 1000000 chr ENSMUST00000067058 l18 e 8 nr 1500000 chr ENSMUST00000020908 l18 e 8 nr 2000000 chr ENSMUST00000170088 l18 e 8 nr 2500000 chr ENSMUST00000168378 l18 e 8 nr 3000000 chr ENSMUST00000026218 l18 e 8 nr 3500000 chr ENSMUST00000099198 l18 e 8 nr 4000000 chr ENSMUST00000025838 l18 e 8 nr 4500000 chr ENSMUST00000046418 l18 e 8 nr 5000000 chr ENSMUST00000085998 l18 e 8 nr 5500000 chr ENSMUST00000135298 l18 e 8 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5714036 reads mapping to 2281822 Unique genomic coordinates Making up 63230 groups Consisting of 17171 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000027769 l18 e 9 nr 1000000 chr ENSMUST00000039259 l18 e 9 nr 1500000 chr ENSMUST00000108039 l18 e 9 nr 2000000 chr ENSMUST00000151029 l18 e 9 nr 2500000 chr ENSMUST00000054449 l18 e 9 nr 3000000 chr ENSMUST00000168159 l18 e 9 nr 3500000 chr ENSMUST00000070199 l18 e 9 nr 4000000 chr ENSMUST00000136139 l18 e 9 nr 4500000 chr ENSMUST00000154169 l18 e 9 nr 5000000 chr ENSMUST00000098509 l18 e 9 nr 5500000 chr ENSMUST00000002099 l18 e 9 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5787638 reads mapping to 2345055 Unique genomic coordinates Making up 64695 groups Consisting of 17571 clusters