Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000170680 l18 e 0 nr 1000000 chr ENSMUST00000109310 l18 e 0 nr 1500000 chr ENSMUST00000055390 l18 e 0 nr 2000000 chr ENSMUST00000022380 l18 e 0 nr 2500000 chr ENSMUST00000023600 l18 e 0 nr 3000000 chr ENSMUST00000074770 l18 e 0 nr 3500000 chr ENSMUST00000063690 l18 e 0 nr 4000000 chr ENSMUST00000029860 l18 e 0 nr 4500000 chr ENSMUST00000172660 l18 e 0 nr 5000000 chr ENSMUST00000121270 l18 e 0 nr 5500000 chr ENSMUST00000117160 l18 e 0 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5963344 reads mapping to 3870937 Unique genomic coordinates Making up 53496 groups Consisting of 0 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000056571 l18 e 1 nr 1000000 chr ENSMUST00000159081 l18 e 1 nr 1500000 chr ENSMUST00000132121 l18 e 1 nr 2000000 chr ENSMUST00000112631 l18 e 1 nr 2500000 chr ENSMUST00000132881 l18 e 1 nr 3000000 chr ENSMUST00000169141 l18 e 1 nr 3500000 chr ENSMUST00000118531 l18 e 1 nr 4000000 chr ENSMUST00000128091 l18 e 1 nr 4500000 chr ENSMUST00000114641 l18 e 1 nr 5000000 chr ENSMUST00000091291 l18 e 1 nr 5500000 chr ENSMUST00000087091 l18 e 1 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5519643 reads mapping to 3680819 Unique genomic coordinates Making up 51249 groups Consisting of 0 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000141722 l18 e 2 nr 1000000 chr ENSMUST00000132012 l18 e 2 nr 1500000 chr ENSMUST00000170002 l18 e 2 nr 2000000 chr ENSMUST00000063492 l18 e 2 nr 2500000 chr ENSMUST00000160522 l18 e 2 nr 3000000 chr ENSMUST00000150702 l18 e 2 nr 3500000 chr ENSMUST00000043812 l18 e 2 nr 4000000 chr ENSMUST00000115152 l18 e 2 nr 4500000 chr ENSMUST00000168942 l18 e 2 nr 5000000 chr ENSMUST00000169372 l18 e 2 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5367264 reads mapping to 3534099 Unique genomic coordinates Making up 48923 groups Consisting of 0 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165923 l18 e 3 nr 1000000 chr ENSMUST00000093253 l18 e 3 nr 1500000 chr ENSMUST00000021523 l18 e 3 nr 2000000 chr ENSMUST00000112283 l18 e 3 nr 2500000 chr ENSMUST00000115803 l18 e 3 nr 3000000 chr ENSMUST00000076043 l18 e 3 nr 3500000 chr ENSMUST00000046233 l18 e 3 nr 4000000 chr ENSMUST00000165373 l18 e 3 nr 4500000 chr ENSMUST00000172323 l18 e 3 nr 5000000 chr ENSMUST00000107263 l18 e 3 nr 5500000 chr ENSMUST00000144323 l18 e 3 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5864719 reads mapping to 3765293 Unique genomic coordinates Making up 52429 groups Consisting of 0 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000163374 l18 e 4 nr 1000000 chr ENSMUST00000137594 l18 e 4 nr 1500000 chr ENSMUST00000049784 l18 e 4 nr 2000000 chr ENSMUST00000054274 l18 e 4 nr 2500000 chr ENSMUST00000100024 l18 e 4 nr 3000000 chr ENSMUST00000115274 l18 e 4 nr 3500000 chr ENSMUST00000130524 l18 e 4 nr 4000000 chr ENSMUST00000042744 l18 e 4 nr 4500000 chr ENSMUST00000164784 l18 e 4 nr 5000000 chr ENSMUST00000160894 l18 e 4 nr 5500000 chr ENSMUST00000135764 l18 e 4 nr 6000000 chr ENSMUST00000141354 l18 e 4 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 6024560 reads mapping to 3899308 Unique genomic coordinates Making up 53945 groups Consisting of 0 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000161155 l18 e 5 nr 1000000 chr ENSMUST00000070725 l18 e 5 nr 1500000 chr ENSMUST00000085415 l18 e 5 nr 2000000 chr ENSMUST00000168985 l18 e 5 nr 2500000 chr ENSMUST00000089185 l18 e 5 nr 3000000 chr ENSMUST00000165065 l18 e 5 nr 3500000 chr ENSMUST00000174785 l18 e 5 nr 4000000 chr ENSMUST00000037055 l18 e 5 nr 4500000 chr ENSMUST00000113355 l18 e 5 nr 5000000 chr ENSMUST00000142475 l18 e 5 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5446716 reads mapping to 3651171 Unique genomic coordinates Making up 51014 groups Consisting of 0 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000097436 l18 e 6 nr 1000000 chr ENSMUST00000101326 l18 e 6 nr 1500000 chr ENSMUST00000095536 l18 e 6 nr 2000000 chr ENSMUST00000074766 l18 e 6 nr 2500000 chr ENSMUST00000113846 l18 e 6 nr 3000000 chr ENSMUST00000050096 l18 e 6 nr 3500000 chr ENSMUST00000144686 l18 e 6 nr 4000000 chr ENSMUST00000156656 l18 e 6 nr 4500000 chr ENSMUST00000152156 l18 e 6 nr 5000000 chr ENSMUST00000141666 l18 e 6 nr 5500000 chr ENSMUST00000116566 l18 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5807643 reads mapping to 3783159 Unique genomic coordinates Making up 52418 groups Consisting of 0 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000111167 l18 e 7 nr 1000000 chr ENSMUST00000069837 l18 e 7 nr 1500000 chr ENSMUST00000047967 l18 e 7 nr 2000000 chr ENSMUST00000043227 l18 e 7 nr 2500000 chr ENSMUST00000113917 l18 e 7 nr 3000000 chr ENSMUST00000091497 l18 e 7 nr 3500000 chr ENSMUST00000044277 l18 e 7 nr 4000000 chr ENSMUST00000106587 l18 e 7 nr 4500000 chr ENSMUST00000115477 l18 e 7 nr 5000000 chr ENSMUST00000137947 l18 e 7 nr 5500000 chr ENSMUST00000112907 l18 e 7 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5551091 reads mapping to 3693733 Unique genomic coordinates Making up 51640 groups Consisting of 0 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000041168 l18 e 8 nr 1000000 chr ENSMUST00000109268 l18 e 8 nr 1500000 chr ENSMUST00000085138 l18 e 8 nr 2000000 chr ENSMUST00000079438 l18 e 8 nr 2500000 chr ENSMUST00000114968 l18 e 8 nr 3000000 chr ENSMUST00000005518 l18 e 8 nr 3500000 chr ENSMUST00000099288 l18 e 8 nr 4000000 chr ENSMUST00000107528 l18 e 8 nr 4500000 chr ENSMUST00000161108 l18 e 8 nr 5000000 chr ENSMUST00000098308 l18 e 8 nr 5500000 chr ENSMUST00000010188 l18 e 8 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5753360 reads mapping to 3769962 Unique genomic coordinates Making up 52379 groups Consisting of 0 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000139589 l18 e 9 nr 1000000 chr ENSMUST00000048229 l18 e 9 nr 1500000 chr ENSMUST00000056019 l18 e 9 nr 2000000 chr ENSMUST00000042009 l18 e 9 nr 2500000 chr ENSMUST00000114239 l18 e 9 nr 3000000 chr ENSMUST00000145829 l18 e 9 nr 3500000 chr ENSMUST00000099069 l18 e 9 nr 4000000 chr ENSMUST00000030269 l18 e 9 nr 4500000 chr ENSMUST00000134619 l18 e 9 nr 5000000 chr ENSMUST00000145849 l18 e 9 nr 5500000 chr ENSMUST00000130879 l18 e 9 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5565400 reads mapping to 3673463 Unique genomic coordinates Making up 50959 groups Consisting of 0 clusters