Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000164660 l18 e 0 nr 1000000 chr ENSMUST00000173060 l18 e 0 nr 1500000 chr ENSMUST00000150490 l18 e 0 nr 2000000 chr ENSMUST00000021390 l18 e 0 nr 2500000 chr ENSMUST00000089610 l18 e 0 nr 3000000 chr ENSMUST00000053770 l18 e 0 nr 3500000 chr ENSMUST00000037280 l18 e 0 nr 4000000 chr ENSMUST00000106770 l18 e 0 nr 4500000 chr ENSMUST00000162950 l18 e 0 nr 5000000 chr ENSMUST00000085470 l18 e 0 nr 5500000 chr ENSMUST00000069000 l18 e 0 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5793534 reads mapping to 2544402 Unique genomic coordinates Making up 73028 groups Consisting of 20983 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000009791 l18 e 1 nr 1000000 chr ENSMUST00000002121 l18 e 1 nr 1500000 chr ENSMUST00000117721 l18 e 1 nr 2000000 chr ENSMUST00000108971 l18 e 1 nr 2500000 chr ENSMUST00000113461 l18 e 1 nr 3000000 chr ENSMUST00000028681 l18 e 1 nr 3500000 chr ENSMUST00000043741 l18 e 1 nr 4000000 chr ENSMUST00000071081 l18 e 1 nr 4500000 chr ENSMUST00000108341 l18 e 1 nr 5000000 chr ENSMUST00000137931 l18 e 1 nr 5500000 chr ENSMUST00000119291 l18 e 1 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5677093 reads mapping to 2533049 Unique genomic coordinates Making up 72446 groups Consisting of 20734 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000020312 l18 e 2 nr 1000000 chr ENSMUST00000171032 l18 e 2 nr 1500000 chr ENSMUST00000021572 l18 e 2 nr 2000000 chr ENSMUST00000035682 l18 e 2 nr 2500000 chr ENSMUST00000060722 l18 e 2 nr 3000000 chr ENSMUST00000133432 l18 e 2 nr 3500000 chr ENSMUST00000090942 l18 e 2 nr 4000000 chr ENSMUST00000100962 l18 e 2 nr 4500000 chr ENSMUST00000171822 l18 e 2 nr 5000000 chr ENSMUST00000163972 l18 e 2 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5252073 reads mapping to 2523363 Unique genomic coordinates Making up 71939 groups Consisting of 20899 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000105443 l18 e 3 nr 1000000 chr ENSMUST00000021283 l18 e 3 nr 1500000 chr ENSMUST00000021733 l18 e 3 nr 2000000 chr ENSMUST00000058793 l18 e 3 nr 2500000 chr ENSMUST00000066193 l18 e 3 nr 3000000 chr ENSMUST00000066193 l18 e 3 nr 3500000 chr ENSMUST00000026063 l18 e 3 nr 4000000 chr ENSMUST00000099153 l18 e 3 nr 4500000 chr ENSMUST00000097763 l18 e 3 nr 5000000 chr ENSMUST00000038163 l18 e 3 nr 5500000 chr ENSMUST00000107453 l18 e 3 nr 6000000 chr ENSMUST00000114573 l18 e 3 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 6300003 reads mapping to 2479535 Unique genomic coordinates Making up 71051 groups Consisting of 20416 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000078314 l18 e 4 nr 1000000 chr ENSMUST00000092834 l18 e 4 nr 1500000 chr ENSMUST00000021944 l18 e 4 nr 2000000 chr ENSMUST00000074924 l18 e 4 nr 2500000 chr ENSMUST00000026494 l18 e 4 nr 3000000 chr ENSMUST00000110674 l18 e 4 nr 3500000 chr ENSMUST00000076674 l18 e 4 nr 4000000 chr ENSMUST00000164904 l18 e 4 nr 4500000 chr ENSMUST00000121494 l18 e 4 nr 5000000 chr ENSMUST00000111454 l18 e 4 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5156090 reads mapping to 2564534 Unique genomic coordinates Making up 73423 groups Consisting of 21253 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000105455 l18 e 5 nr 1000000 chr ENSMUST00000092915 l18 e 5 nr 1500000 chr ENSMUST00000021495 l18 e 5 nr 2000000 chr ENSMUST00000023075 l18 e 5 nr 2500000 chr ENSMUST00000006205 l18 e 5 nr 3000000 chr ENSMUST00000110495 l18 e 5 nr 3500000 chr ENSMUST00000106455 l18 e 5 nr 4000000 chr ENSMUST00000032485 l18 e 5 nr 4500000 chr ENSMUST00000048665 l18 e 5 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 4932753 reads mapping to 2549278 Unique genomic coordinates Making up 72917 groups Consisting of 21177 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000099866 l18 e 6 nr 1000000 chr ENSMUST00000126296 l18 e 6 nr 1500000 chr ENSMUST00000109906 l18 e 6 nr 2000000 chr ENSMUST00000170666 l18 e 6 nr 2500000 chr ENSMUST00000036226 l18 e 6 nr 3000000 chr ENSMUST00000111846 l18 e 6 nr 3500000 chr ENSMUST00000029876 l18 e 6 nr 4000000 chr ENSMUST00000100816 l18 e 6 nr 4500000 chr ENSMUST00000078816 l18 e 6 nr 5000000 chr ENSMUST00000088546 l18 e 6 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5082754 reads mapping to 2566665 Unique genomic coordinates Making up 73365 groups Consisting of 21499 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000019977 l18 e 7 nr 1000000 chr ENSMUST00000071487 l18 e 7 nr 1500000 chr ENSMUST00000021347 l18 e 7 nr 2000000 chr ENSMUST00000080857 l18 e 7 nr 2500000 chr ENSMUST00000077277 l18 e 7 nr 3000000 chr ENSMUST00000112877 l18 e 7 nr 3500000 chr ENSMUST00000090127 l18 e 7 nr 4000000 chr ENSMUST00000031367 l18 e 7 nr 4500000 chr ENSMUST00000026897 l18 e 7 nr 5000000 chr ENSMUST00000131717 l18 e 7 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5452887 reads mapping to 2562169 Unique genomic coordinates Making up 73368 groups Consisting of 21305 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000019908 l18 e 8 nr 1000000 chr ENSMUST00000126388 l18 e 8 nr 1500000 chr ENSMUST00000168338 l18 e 8 nr 2000000 chr ENSMUST00000165298 l18 e 8 nr 2500000 chr ENSMUST00000159778 l18 e 8 nr 3000000 chr ENSMUST00000091348 l18 e 8 nr 3500000 chr ENSMUST00000049208 l18 e 8 nr 4000000 chr ENSMUST00000169948 l18 e 8 nr 4500000 chr ENSMUST00000155118 l18 e 8 nr 5000000 chr ENSMUST00000078448 l18 e 8 nr 5500000 chr ENSMUST00000105018 l18 e 8 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5637735 reads mapping to 2485218 Unique genomic coordinates Making up 71129 groups Consisting of 20286 clusters Running PARalyzer v1.1 Parsing bowtie file(s)...nr 500000 chr ENSMUST00000165809 l18 e 9 nr 1000000 chr ENSMUST00000093299 l18 e 9 nr 1500000 chr ENSMUST00000092649 l18 e 9 nr 2000000 chr ENSMUST00000022629 l18 e 9 nr 2500000 chr ENSMUST00000114849 l18 e 9 nr 3000000 chr ENSMUST00000102899 l18 e 9 nr 3500000 chr ENSMUST00000162269 l18 e 9 nr 4000000 chr ENSMUST00000039939 l18 e 9 nr 4500000 chr ENSMUST00000100929 l18 e 9 nr 5000000 chr ENSMUST00000034279 l18 e 9 Done Creating Read Groups & Clusters...Done Sorting Groups...Done Generating Output...Done! I identified a total of 5379824 reads mapping to 2562587 Unique genomic coordinates Making up 73340 groups Consisting of 21047 clusters