0hrep1 11483855 reads 11481472 aln   99.97924912845033 %
0hrep2 5468587 reads 5466814 aln  99.96757846222434 % #min_n_reads 
0hrep3 16830315 reads 16826478 aln  99.97720185272825 % #max_n_reads 
2hrep1 7314203 reads 7312032 aln  99.97031802371359 %
2hrep2 7493007 reads 7488861 aln  99.94466840882439 %
2hrep3 9526713 reads  9524176 aln  99.9733696186712 %
6hrep1 16607034 reads 16599071 aln  99.95205043838653 %
6hrep2 12437144 reads 12434006 aln  99.97476912706004 %
6hrep3 6165724 reads 6162679 aln  99.95061407224844 %
IFN 5690230 reads 5688365 aln  99.96722452343754 %
IGG 5571672 reads 5569824 aln  99.96683221840769 % #2nd min
IL4 13338085 reads 13334917 aln  99.97624846445348 %



-rw-r--r-- 1 reczko users 6167738983 Dec 26 19:55 /data/images/proton/DKlab/mr/parclip/shrimp/6hrep1-15mMm.bam
-rw-r--r-- 1 reczko users 6457013716 Dec 26 03:53 /data/images/proton/DKlab/mr/parclip/shrimp/0hrep3-15mMm.bam
-rw-r--r-- 1 reczko users 4629375449 Dec 25 19:39 /data/images/proton/DKlab/mr/parclip/shrimp/0hrep1-15mMm.bam
-rw-r--r-- 1 reczko users 2372480332 Dec 23 10:57 /data/images/proton/DKlab/mr/parclip/shrimp/IGG-15mMm.bam
-rw-r--r-- 1 reczko users 2673831255 Dec 23 08:11 /data/images/proton/DKlab/mr/parclip/shrimp/IFN-15mMm.bam
-rw-r--r-- 1 reczko users 2445953571 Dec 23 05:22 /data/images/proton/DKlab/mr/parclip/shrimp/0hrep2-15mMm.bam
-rw-r--r-- 1 reczko users 5254638155 Dec 23 02:38 /data/images/proton/DKlab/mr/parclip/shrimp/6hrep2-15mMm.bam
-rw-r--r-- 1 reczko users 2731900511 Dec 22 17:18 /data/images/proton/DKlab/mr/parclip/shrimp/6hrep3-15mMm.bam
-rw-r--r-- 1 reczko users 5466483095 Dec 22 12:38 /data/images/proton/DKlab/mr/parclip/shrimp/IL4-15mMm.bam
-rw-r--r-- 1 reczko users 3248457174 Dec 22 09:09 /data/images/proton/DKlab/mr/parclip/shrimp/2hrep1-15mMm.bam
-rw-r--r-- 1 reczko users 4040433580 Dec 22 05:27 /data/images/proton/DKlab/mr/parclip/shrimp/2hrep3-15mMm.bam
-rw-r--r-- 1 reczko users 3290812216 Dec 22 00:45 /data/images/proton/DKlab/mr/parclip/shrimp/2hrep2-15mMm.bam

for i in /data/images/proton/DKlab/mr/parclip/shrimp/*-15mMm.bam
do
echo $i
samtools view $i | cut -f 1 | sort | uniq | wc -l
done