# il4 genomic alignments -> paralyzer
# >=5tc, modescore filtering




#est SAET

MINIMUM_READ_COUNT_FOR_KDE=#integer#
#integer# = Minimum read depth at a location to make a KDE estimate (default 1) => (recommended: 5)
MINIMUM_CONVERSION_LOCATIONS_FOR_CLUSTER=#integer#
#integer# = Minimum number of separate locations to have a reported conversion for a cluster to be reported (default 1) => (recommended: 2)

MAXIMUM_NUMBER_OF_NON_CONVERSION_MISMATCHES=#integer#
#integer# = Maximum number of non-conversion mismatches of a mapped read to be included in the analysis (default 5)
test 10

MINIMUM_READ_COUNT_PER_GROUP=#integer#
#integer# = Minimum number of reads required to call a group (default 10)
test 10


BANDWIDTH=#integer#
#integer# = Size of bandwidth for KDE calculation (default 3)
test 7