/data/images/proton/DKlab/orsalia/perExon/README-perexon.txt

#/data/results/tools/rnaseq/subread/subread-1.5.2-source/bin/featureCounts -O --fraction -M -s 1 -J -f -g gene_name -t exon -T 4 -a  /data/results/reference/hsa/gencode/gencode.v26lift37.annotation_exons.gtf -o /data/images/proton2/run341/rpkm/exonGencode.cnt PHR23r-FUBP2.bam   PHR22r-TCF4.bam PHR21r-bcatMono.bam  PHR20r-bcatPoly.bam    PHR24r-IgG.bam PHR19r-Input.bam /data/images/proton/run15/www/con_b.bam /data/images/proton/run15/www/con_a.bam
/data/results/tools/rnaseq/subread/subread-1.5.2-source/bin/featureCounts -O --fraction -M -s 1 -J -f -g gene_name -t exon -T 4 -a  /data/results/reference/mmu/Mus_musculus.NCBIM37.64-toMM9.gtf -o

fpkm = texpr(bg_chrX,meas="FPKM")