Status	../../tophat/KO_0h_replicate_I/accepted_hits.bam	../../tophat/KO_0h_replicate_II/accepted_hits.bam	../../tophat/KO_2h_replicate_I/accepted_hits.bam	../../tophat/KO_2h_replicate_II/accepted_hits.bam	../../tophat/KO_6h_replicate_I/accepted_hits.bam	../../tophat/KO_6h_replicate_II/accepted_hits.bam	../../tophat/KO_IFN-gamma_replicate_II/accepted_hits.bam	../../tophat/KO_IFN_replicate_I/accepted_hits.bam	../../tophat/KO_IL4_replicate_I/accepted_hits.bam	../../tophat/KO_IL4_replicate_II/accepted_hits.bam	../../tophat/WT_0h_replicate_I/accepted_hits.bam	../../tophat/WT_0h_replicate_II/accepted_hits.bam	../../tophat/WT_2h_replicate_I/accepted_hits.bam	../../tophat/WT_2h_replicate_II/accepted_hits.bam	../../tophat/WT_6h_replicate_I/accepted_hits.bam	../../tophat/WT_6h_replicate_II/accepted_hits.bam	../../tophat/WT_IFN-gamma_replicate_I/accepted_hits.bam	../../tophat/WT_IFN-gamma_replicate_II/accepted_hits.bam	../../tophat/WT_IL4_replicate_I/accepted_hits.bam	../../tophat/WT_IL4_replicate_II/accepted_hits.bam
Assigned	702639	850140	565267	682139	833587	576014	686947	902594	646447	513597	584432	352656	617901	294826	424357	667796	638532	512021	752767	514152
Unassigned_Ambiguity	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Unassigned_MultiMapping	6034003	6613310	7813017	8592889	8934868	7754544	7684369	10896676	6303219	5424732	5873923	3633432	5849980	4515674	3331061	4932554	3855658	5417628	3977755	2811035
Unassigned_NoFeatures	228519	302339	190472	326271	310405	233382	265195	366954	250112	147019	253689	141459	232522	155664	162822	215637	204401	186024	265210	144265
Unassigned_Unmapped	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Unassigned_MappingQuality	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Unassigned_FragmentLength	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Unassigned_Chimera	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Unassigned_Secondary	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Unassigned_Nonjunction	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Unassigned_Duplicate	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0