========== _____ _ _ ____ _____ ______ _____ ===== / ____| | | | _ \| __ \| ____| /\ | __ \ ===== | (___ | | | | |_) | |__) | |__ / \ | | | | ==== \___ \| | | | _ <| _ /| __| / /\ \ | | | | ==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| | ========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/ v1.5.2 //========================== featureCounts setting ===========================\\ || || || Input files : 20 BAM files || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || S /home/reczko/bak/doc/fleming/kafasla/DKlab ... || || || || Output file : gene_counts_merged_NCBIM37.64_id.txt || || Summary : gene_counts_merged_NCBIM37.64_id.txt.summary || || Annotation : /data/results/reference/mmu/Mus_musculus.NCB ... || || Dir for temp files : ./ || || || || Threads : 8 || || Level : meta-feature level || || Paired-end : no || || Strand specific : no || || Multimapping reads : not counted || || Multi-overlapping reads : counted || || Min overlapping bases : 1 || || || \\===================== http://subread.sourceforge.net/ ======================// //================================= Running ==================================\\ || || || Load annotation file /data/results/reference/mmu/Mus_musculus.NCBIM37. ... || || Features : 677632 || || Meta-features : 37310 || || Chromosomes/contigs : 22 || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 6965161 || || Successfully assigned reads : 618494 (8.9%) || || Running time : 0.02 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 7765789 || || Successfully assigned reads : 773008 (10.0%) || || Running time : 0.02 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 8568756 || || Successfully assigned reads : 460089 (5.4%) || || Running time : 0.02 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 9601299 || || Successfully assigned reads : 587700 (6.1%) || || Running time : 0.02 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 10078860 || || Successfully assigned reads : 767818 (7.6%) || || Running time : 0.02 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 8563940 || || Successfully assigned reads : 517413 (6.0%) || || Running time : 0.02 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 8636511 || || Successfully assigned reads : 606570 (7.0%) || || Running time : 0.02 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 12166224 || || Successfully assigned reads : 777909 (6.4%) || || Running time : 0.03 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 7199778 || || Successfully assigned reads : 565052 (7.8%) || || Running time : 0.02 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 6085348 || || Successfully assigned reads : 452988 (7.4%) || || Running time : 0.02 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 6712044 || || Successfully assigned reads : 503102 (7.5%) || || Running time : 0.02 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 4127547 || || Successfully assigned reads : 292649 (7.1%) || || Running time : 0.01 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 6700403 || || Successfully assigned reads : 466341 (7.0%) || || Running time : 0.02 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 4966164 || || Successfully assigned reads : 248953 (5.0%) || || Running time : 0.01 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 3918240 || || Successfully assigned reads : 363839 (9.3%) || || Running time : 0.01 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 5815987 || || Successfully assigned reads : 564268 (9.7%) || || Running time : 0.02 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 4698591 || || Successfully assigned reads : 534484 (11.4%) || || Running time : 0.01 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 6115673 || || Successfully assigned reads : 413928 (6.8%) || || Running time : 0.02 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 4995732 || || Successfully assigned reads : 688131 (13.8%) || || Running time : 0.02 minutes || || || || Process BAM file /home/reczko/bak/doc/fleming/kafasla/DKlab/mr/Polysom ... || || Single-end reads are included. || || Assign reads to features... || || Total reads : 3469452 || || Successfully assigned reads : 442859 (12.8%) || || Running time : 0.01 minutes || || || || Read assignment finished. || || || || Summary of counting results can be found in file "gene_counts_merged_NCBI || || M37.64_id.txt" || || || \\===================== http://subread.sourceforge.net/ 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