==========     _____ _    _ ____  _____  ______          _____  
        =====         / ____| |  | |  _ \|  __ \|  ____|   /\   |  __ \ 
          =====      | (___ | |  | | |_) | |__) | |__     /  \  | |  | |
            ====      \___ \| |  | |  _ <|  _  /|  __|   / /\ \ | |  | |
              ====    ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
        ==========   |_____/ \____/|____/|_|  \_\______/_/    \_\_____/
	  v1.5.2

//========================== featureCounts setting ===========================\\
||                                                                            ||
||             Input files : 21 BAM files                                     ||
||                           S /data/images/proton/DKlab/run392/DKR4b-WT1 ... ||
||                           S DKR5_InputWt-2M.bam                            ||
||                           S DKR6_InputWt-3F.bam                            ||
||                           S DKR7_InputTg6105-1M.bam                        ||
||                           S DKR8_InputTg6105-2M.bam                        ||
||                           S DKR9-InputTg6105-3F.bam                        ||
||                           S DKR13r_M2RiPWt-1M.bam                          ||
||                           S DKR14r_M2RiPWt-2M.bam                          ||
||                           S DKR15r_M2RiPWt-3F.bam                          ||
||                           S DKR16_M2RiPTg6105-1M.bam                       ||
||                           S DKR17r_M2RiPTg6105-2M.bam                      ||
||                           S DKR18_M2RiPTg6105-3F.bam                       ||
||                           S DKR19-HuRRiPC57-1M.bam                         ||
||                           S DKR21-HuRRiPC57-3F.bam                         ||
||                           S /data/images/proton/DKlab/run392/DKR20-HUR ... ||
||                           S DKR22-IgGRiPC57-1M.bam                         ||
||                           S DKR23r-IgGRiPC57-2M.bam                        ||
||                           S DKR24r-IgGRiPC57-3F.bam                        ||
||                           S DKR10-InputC57-1M.bam                          ||
||                           S DKR11-InputC57-2M.bam                          ||
||                           S DKR12-InputC57-3F.bam                          ||
||                                                                            ||
||             Output file : exonGencode.cnt                                  ||
||                 Summary : exonGencode.cnt.summary                          ||
||              Annotation : /data/results/reference/mmu/Mus_musculus.GRC ... ||
||       Junction Counting : <output_file>.jcounts                            ||
||      Dir for temp files : ./                                               ||
||                                                                            ||
||                 Threads : 4                                                ||
||                   Level : feature level                                    ||
||              Paired-end : no                                               ||
||         Strand specific : stranded                                         ||
||      Multimapping reads : counted                                          ||
|| Multi-overlapping reads : counted                                          ||
||   Min overlapping bases : 1                                                ||
||                                                                            ||
\\===================== http://subread.sourceforge.net/ ======================//

//================================= Running ==================================\\
||                                                                            ||
|| Load annotation file /data/results/reference/mmu/Mus_musculus.GRCm38.9 ... ||
||    Features : 801623                                                       ||
||    Meta-features : 53672                                                   ||
||    Chromosomes/contigs : 45                                                ||
||                                                                            ||
|| Process BAM file /data/images/proton/DKlab/run392/DKR4b-WT1M.bam...        ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 24547608                                                  ||
||    Successfully assigned reads : 8892790 (36.2%)                           ||
||    Running time : 0.74 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR5_InputWt-2M.bam...                                    ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 14761798                                                  ||
||    Successfully assigned reads : 6198246 (42.0%)                           ||
||    Running time : 0.38 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR6_InputWt-3F.bam...                                    ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 15865794                                                  ||
||    Successfully assigned reads : 5306487 (33.4%)                           ||
||    Running time : 0.46 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR7_InputTg6105-1M.bam...                                ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 17836872                                                  ||
||    Successfully assigned reads : 6819237 (38.2%)                           ||
||    Running time : 0.53 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR8_InputTg6105-2M.bam...                                ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 16415771                                                  ||
||    Successfully assigned reads : 5759967 (35.1%)                           ||
||    Running time : 0.40 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR9-InputTg6105-3F.bam...                                ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 22673189                                                  ||
||    Successfully assigned reads : 9423379 (41.6%)                           ||
||    Running time : 0.69 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR13r_M2RiPWt-1M.bam...                                  ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 15051495                                                  ||
||    Successfully assigned reads : 4594298 (30.5%)                           ||
||    Running time : 0.41 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR14r_M2RiPWt-2M.bam...                                  ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 25419981                                                  ||
||    Successfully assigned reads : 8749859 (34.4%)                           ||
||    Running time : 0.77 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR15r_M2RiPWt-3F.bam...                                  ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 26902302                                                  ||
||    Successfully assigned reads : 8012550 (29.8%)                           ||
||    Running time : 0.75 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR16_M2RiPTg6105-1M.bam...                               ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 19051604                                                  ||
||    Successfully assigned reads : 6230771 (32.7%)                           ||
||    Running time : 0.58 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR17r_M2RiPTg6105-2M.bam...                              ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 20225181                                                  ||
||    Successfully assigned reads : 6506224 (32.2%)                           ||
||    Running time : 0.56 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR18_M2RiPTg6105-3F.bam...                               ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 18830190                                                  ||
||    Successfully assigned reads : 4749132 (25.2%)                           ||
||    Running time : 0.48 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR19-HuRRiPC57-1M.bam...                                 ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 26612766                                                  ||
||    Successfully assigned reads : 10701065 (40.2%)                          ||
||    Running time : 0.75 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR21-HuRRiPC57-3F.bam...                                 ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 26911156                                                  ||
||    Successfully assigned reads : 14437733 (53.6%)                          ||
||    Running time : 0.69 minutes                                             ||
||                                                                            ||
|| Process BAM file /data/images/proton/DKlab/run392/DKR20-HURRIPC57-2M.b ... ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 26327753                                                  ||
||    Successfully assigned reads : 6578490 (25.0%)                           ||
||    Running time : 0.74 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR22-IgGRiPC57-1M.bam...                                 ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 15856243                                                  ||
||    Successfully assigned reads : 7773624 (49.0%)                           ||
||    Running time : 0.43 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR23r-IgGRiPC57-2M.bam...                                ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 26656024                                                  ||
||    Successfully assigned reads : 10406724 (39.0%)                          ||
||    Running time : 0.83 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR24r-IgGRiPC57-3F.bam...                                ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 28828775                                                  ||
||    Successfully assigned reads : 11069412 (38.4%)                          ||
||    Running time : 0.95 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR10-InputC57-1M.bam...                                  ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 23060584                                                  ||
||    Successfully assigned reads : 8574636 (37.2%)                           ||
||    Running time : 1.05 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR11-InputC57-2M.bam...                                  ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 21878680                                                  ||
||    Successfully assigned reads : 9745287 (44.5%)                           ||
||    Running time : 1.25 minutes                                             ||
||                                                                            ||
|| Process BAM file DKR12-InputC57-3F.bam...                                  ||
||    Single-end reads are included.                                          ||
||    Assign reads to features...                                             ||
||    Total reads : 27703813                                                  ||
||    Successfully assigned reads : 10049939 (36.3%)                          ||
||    Running time : 1.15 minutes                                             ||
||                                                                            ||
||                 Found 0 junctions in all the input files.                  ||
||                                                                            ||
||                         Read assignment finished.                          ||
||                                                                            ||
|| Summary of counting results can be found in file "exonGencode.cnt"         ||
||                                                                            ||
\\===================== http://subread.sourceforge.net/ ======================//