[18:26:00] Loading reference annotation.
[18:26:03] Inspecting maps and determining fragment length distributions.
[18:28:13] Modeling fragment count overdispersion.
[18:29:19] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 2878241.62
>	Raw Map Mass: 2389025.02
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 2878241.62
>	Raw Map Mass: 2462520.50
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 2878241.62
>	Raw Map Mass: 3528259.24
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 2878241.62
>	Raw Map Mass: 2801487.87
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 2878241.62
>	Raw Map Mass: 3170362.07
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[18:30:54] Calculating preliminary abundance estimates
[18:30:54] Testing for differential expression and regulation in locus.
Processed 64912 loci.                       
Performed 41972 isoform-level transcription difference tests
Performed 38490 tss-level transcription difference tests
Performed 31688 gene-level transcription difference tests
Performed 0 CDS-level transcription difference tests
Performed 0 splicing tests
Performed 0 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info