samplename filename condition paired stranded SCR20 /data/images/proton/run141/tophat_005/sort_uniq.bam WT single yes SCR21 /data/images/proton/run143/tophat_009/sort_uniq.bam HET single yes SCR23 /data/images/proton/run143/tophat_015/sort_uniq.bam HET single yes