samplename filename condition paired stranded SCR19 /data/images/proton/run128/tophat_015/sort_uniq.bam WT single yes SCR18 /data/images/proton/run127/tophat_005/sort_uniq.bam WT single yes SCR17 /data/images/proton/run128/tophat_004/sort_uniq.bam MUT single yes SCR16 /data/images/proton/run127/tophat_002/sort_uniq.bam MUT single yes