#!/bin/bash
declare -A MCR
MCR[ HoxB7cre_HET_SCR16.bam ]=37183759
MCR[ HoxB7cre_HET_SCR17.bam ]=50831051
MCR[ HoxB7cre_WT_SCR18.bam ]=36176559
MCR[ HoxB7cre_WT_SCR19.bam ]=35550931



let min=9999999999;
for i in *bam
do
if [ ${MCR[ $i ]} -le $min ]; then let min=${MCR[ $i ]}; fi
done
echo "Sampling to smallest library containing" $min " reads"

for i in *bam
do
sc=$(echo "scale=15; $min/${MCR[ $i ]}" | bc) 
echo $i ${MCR[ $i ]} $sc
#/data/results/tools/proton/tophat2unstranded-bigwig1.sh $i /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome
#/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh $i /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome $sc
/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh $i /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome $sc
done
ln -s . mm9