[14:39:20] Loading reference annotation.
[14:39:28] Inspecting maps and determining fragment length distributions.
[14:50:19] Modeling fragment count overdispersion.
[14:51:24] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 34987660.28
>	Raw Map Mass: 47438665.96
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 34987660.28
>	Raw Map Mass: 26557959.46
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 34987660.28
>	Raw Map Mass: 28888529.73
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 34987660.28
>	Raw Map Mass: 41406200.10
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[14:52:30] Calculating preliminary abundance estimates
[14:52:30] Testing for differential expression and regulation in locus.
Processed 41785 loci.                       
Performed 72398 isoform-level transcription difference tests
Performed 51824 tss-level transcription difference tests
Performed 31954 gene-level transcription difference tests
Performed 26308 CDS-level transcription difference tests
Performed 0 splicing tests
Performed 0 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info