[02:55:34] Loading reference annotation.
[02:55:41] Inspecting maps and determining fragment length distributions.
[03:06:23] Modeling fragment count overdispersion.
[03:07:28] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 35118018.91
>	Raw Map Mass: 47545166.63
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 35118018.91
>	Raw Map Mass: 26658728.04
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 35118018.91
>	Raw Map Mass: 28996445.32
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 35118018.91
>	Raw Map Mass: 41501174.06
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[03:08:34] Calculating preliminary abundance estimates
[03:08:34] Testing for differential expression and regulation in locus.
Processed 40815 loci.                       
Performed 72989 isoform-level transcription difference tests
Performed 51932 tss-level transcription difference tests
Performed 31502 gene-level transcription difference tests
Performed 26158 CDS-level transcription difference tests
Performed 0 splicing tests
Performed 0 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info