#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
#Sampling to smallest library containing14569312 reads
ln -s . mm10
echo GZS17.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh GZS17.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/genome.fa.fai 0.265044
echo GZS34.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh GZS34.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/genome.fa.fai 1
echo GZS35.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh GZS35.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/genome.fa.fai 0.733776
echo GZS36.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh GZS36.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/genome.fa.fai 0.678943